D1.3.9 (HL)—CRISPR-Cas9 gene editing
CRISPR-Cas9 uses guide RNA targeting and Cas9 cutting to alter DNA sequences by deletion, insertion, disruption or replacement in selected genes.
- Syllabus
- First assessment 2025
- Objective
- D1.3.9
- Level
- HL
CRISPR-Cas9 uses guide RNA targeting and Cas9 cutting to alter DNA sequences by deletion, insertion, disruption or replacement in selected genes.

Coverage 2025–2025 · Updated 16 Jul 2026
CRISPR-Cas9 gene editing uses a guide RNA to direct the Cas9 enzyme to a complementary DNA target, where Cas9 cuts the DNA so the sequence can be changed.
Changing the guide RNA changes the target sequence. After cutting, gene editing can delete DNA, insert or replace a sequence, or disrupt the gene so that it no longer functions.
Choose a target → design a complementary guide RNA → guide RNA directs Cas9 → Cas9 cuts near the target → the DNA is edited → verify the sequence and biological result.
Successful-use example from an official IB paper: CRISPR-Cas9 repair of a mutated DMD gene restored expression of dystrophin. Depending on the mutation, editing can replace a changed codon, add DNA missing after a deletion, or remove DNA added by an insertion.
Restoring dystrophin expression demonstrates a successful molecular result; it does not by itself prove complete, safe clinical treatment. Delivery, unintended edits and regulation must still be considered.
This objective is assessed through structured response, commonly using Explain.
Explain
Build the answer around this relationship: Guide RNA directs Cas9 to a complementary DNA target.
Representative question
Explain ways in which CRISPR-Cas9 gene editing could be used to change the mutated dystrophin protein produced.
a. gene editing requires a method for finding a target sequence in the genome/DNA/gene and replacing it with the desired sequence;
b. (gene editing could) change codon/point mutation/substitution that encodes/codes for a different amino acid (causing change in protein/dystrophin);
c. change codon that introduced a stop codon (making shorter peptide/dystrophin);
d. introduce DNA section/bases if mutation is a deletion;
e. delete DNA section/bases if mutation is an insertion;
a. both parts needed.
3 max
Gene knockout makes a specific gene non-functional to investigate phenotype; model organisms such as mice, Drosophila, zebrafish, and Arabidopsis support KO libraries. Guide RNA directs Cas9 to a complementary DNA target sequence; Cas9 cutting enables deletion, replacement, insertion, or gene disruption. Conserved sequences remain similar across species or long evolutionary times; conservation suggests essential function, lower mutation rate, or strong purifying selection.