Course review

C1.1 Enzymes and metabolism

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Learning objective

C1.1.1—Enzymes as catalysts

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• Enzymes are mostly protein biological catalysts, with some RNA examples • They work in small amounts and remain unchanged after catalysis

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Learning objective

C1.1.2—Role in metabolism

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• Metabolism is all enzyme-controlled chemical reactions in cells • Specific enzymes control which metabolic reactions occur and when

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Learning objective

C1.1.3—Anabolic and catabolic reactions

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• Anabolism builds complex molecules by condensation and requires energy • Catabolism breaks molecules by hydrolysis or oxidation and releases energy

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Learning objective

C1.1.4—Enzymes as globular proteins

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• Enzymes are usually globular proteins with a small active-site pocket • The active site binds substrate, forms an ES complex, and catalyses reaction

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C1.1.5—Induced-fit binding

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• Substrate binding induces shape changes in both enzyme and substrate • Induced fit aligns catalytic groups and raises substrate toward transition state

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Learning objective

C1.1.6—Molecular motion

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• Molecular motion brings substrates and active sites into collision • Higher kinetic energy increases successful active-site collisions

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C1.1.7—Relationships between structure and function

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• Active-site amino acid arrangement determines substrate specificity • Denaturation changes tertiary structure and active-site shape, not peptide bonds

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Learning objective

C1.1.8—Effects on enzyme activity

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• Temperature increases rate to an optimum, then denaturation lowers activity • pH changes active-site bonding; substrate concentration rises to saturation plateau

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Learning objective

C1.1.9—Measuring enzyme reactions

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• Measure substrate loss or product formation per unit time • Use initial rate, replicates, controls, and graphs from amylase or catalase assays

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Learning objective

C1.1.10—Effect of enzymes on activation energy

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• Enzymes lower activation energy by providing an alternative pathway • They stabilize transition states but do not remove the energy barrier

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Learning objective

C1.1.11 (HL)—Intracellular vs. extracellular enzymes

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• Intracellular enzymes act in cytoplasm, organelles, or membranes • Extracellular enzymes are secreted and act outside cells, such as digestion enzymes

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Learning objective

C1.1.12 (HL)—Heat generation

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• Exergonic metabolic reactions inevitably release some energy as heat • Endotherms use metabolic heat to maintain body temperature

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C1.1.13 (HL)—Cyclical and linear pathways in metabolism

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• Linear pathways run from substrate to product, such as glycolysis • Cyclical pathways regenerate an acceptor, such as Krebs and Calvin cycles

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Learning objective

C1.1.14 (HL)—Allosteric sites and non-competitive inhibition

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• Non-competitive inhibitors bind away from the active site at allosteric sites • Binding changes enzyme shape and reduces activity despite substrate presence

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Learning objective

C1.1.15 (HL)—Competitive inhibition

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• Competitive inhibitors resemble the substrate and bind reversibly to active sites • Increasing substrate concentration can reduce their effect

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Learning objective

C1.1.16 (HL)—Feedback inhibition

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• End products inhibit earlier pathway enzymes when product accumulates • Feedback inhibition regulates pathway output, such as isoleucine synthesis

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Learning objective

C1.1.17 (HL)—Mechanism-based inhibition

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• Mechanism-based inhibitors become irreversible after active-site reaction starts • Penicillin inhibits transpeptidase and prevents bacterial wall cross-linking

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