D1.1.4—PCR and gel electrophoresis

PCR and gel electrophoresis explains how DNA is copied, checked, amplified or analysed through specific strand relationships, enzymes and molecular techniques.

Syllabus
First assessment 2025
Objective
D1.1.4
Level
HL

Exam analysis

Chance of appearing11%of analysed past papers
Latest appearanceNovember 2025
Most common paperPaper3
Typical marks1

Common command terms

  • Explain
  • Outline
  • State
  • Identify
  • Determine
  • Describe
  • Compare
  • Deduce
  • Predict
  • Suggest

Scoring notes

Common mistake
Describing PCR as DNA separation instead of DNA amplification.

Recent exam appearances

November 2025Paper1A ["HL"] · TZ19[ 1 ]D1.1.4—PCR and gel electrophoresis
November 2025Paper1A ["HL"] · TZ310[ 1 ]D1.1.4—PCR and gel electrophoresis
May 2024Paper3 ["HL"] · TZ212(b)[ 1 ]D1.1.4—PCR and gel electrophoresis
May 2024Paper3 ["HL"] · TZ212(a)[ 2 ]D1.1.4—PCR and gel electrophoresis
November 2023Paper1 ["HL"] · TZ25[ 1 ]D1.1.4—PCR and gel electrophoresis
Practice this objective

Coverage 2015–2025 · Updated 16 Jul 2026

PCR Amplifies DNA and Electrophoresis Separates It

PCR amplifies a selected DNA region; gel electrophoresis then separates DNA fragments mainly by length.

Primers define the target ends. Each thermal cycle uses high temperature to separate strands, lower temperature for primer binding, and a suitable extension temperature for heat-stable Taq DNA polymerase to synthesize new DNA.

Load amplified fragments into wells. Negatively charged DNA moves toward the positive electrode through the gel; shorter fragments move farther than longer fragments in the same time.

Primers amplify a variable DNA locus; electrophoresis separates the resulting fragments, and a size marker allows their approximate lengths to be compared.

PCR increases the amount of target DNA; electrophoresis separates fragments. Primer specificity, contamination controls and the size marker affect interpretation.

PCR and gel electrophoresis

Assessment in practice

1 marks
How it is assessed

This objective is assessed through structured response, multiple choice, commonly using Explain / Outline / State.

Command terms

Explain / Outline / State / Identify / Determine / Describe / Compare / Deduce / Predict / Suggest

What earns marks

Build the answer around this relationship: PCR and gel electrophoresis depends on matching each strand, enzyme or laboratory step to its exact function.

Watch for

Describing PCR as DNA separation instead of DNA amplification.

Representative question

Question 1

[Maximum number: 4]

Describe the polymerase chain reaction (PCR).

Core DNA Replication

DNA replication produces exact DNA copies before cell division and maintains genetic continuity for reproduction, growth, and tissue replacement. Semi-conservative replication gives each new DNA molecule one original strand and one new strand; complementary base pairing and Meselson-Stahl isotope evidence support the model. Helicase unwinds DNA and breaks hydrogen bonds; DNA polymerase joins complementary nucleotides to build new strands. PCR amplifies selected DNA using primers, temperature cycles, and Taq polymerase; gel electrophoresis separates DNA fragments by size and charge. PCR and gel electrophoresis support DNA profiling for forensic identification and paternity testing.

Concept essentials

  • PCR and gel electrophoresis depends on matching each strand, enzyme or laboratory step to its exact function.
  • Template strands and complementary base pairing give pcr and gel electrophoresis its copying accuracy.
  • PCR and gel electrophoresis is clearer when amplification, separation and profiling are not confused.
  • Molecular evidence for pcr and gel electrophoresis must be interpreted from bands, isotopes, primers or enzyme roles.