IB Biology SL Form and Function Concepts

Form and Function connects biological structures to the processes they enable, from molecules and membranes to tissues, organs, transport systems and ecological adaptations.

Syllabus
First assessment 2025
Section
—
Level
SL

Exam analysis

Published Concept evidence in Form and Function repeatedly asks students to connect structure with function across molecules, membranes, cells and exchange systems. The strongest pattern is explaining how specific features enable transport, support, movement, regulation or adaptation.

B1.1 Carbohydrates and lipids

Carbohydrates and lipids connect carbon chemistry, condensation and hydrolysis reactions, molecular structure, solubility, membrane formation, and energy storage functions in organisms.

Syllabus
First assessment 2025
Topic
B1.1
Level
SL

Four bonds let carbon vary without losing stability

Carbon has four electrons available for bonding and can form four strong covalent bonds. It bonds to carbon and to elements such as H, O, N, S and P, so a stable skeleton can carry many different groups.

A carbon atom making four covalent bonds and carbon skeletons arranged as a chain, branch, ring and double-bonded structure.
Structural choice New possibility
chain, branch or ring different overall shapes
single or double bond different geometry and reactivity
attached functional group characteristic chemical behaviour

The carbon skeleton provides a stable framework; the arrangement of bonds and functional groups determines how the molecule behaves.

Condensation stores subunits in a covalent bond

In a condensation reaction, an –OH from one molecule and an –H from another leave as H₂O. A new covalent bond joins the remaining parts.

Two molecules lose OH and H as water while a new covalent bond forms between them.
Subunits joined Larger molecule Linkage formed
monosaccharides polysaccharide glycosidic
amino acids polypeptide peptide
nucleotides nucleic acid phosphodiester

Each joining event releases one water molecule. Repeating the reaction builds a macromolecule; the covalent linkage, not the released water, holds its subunits together.

Hydrolysis uses water to release monomers

During hydrolysis:

  1. water is a reactant
  2. a covalent linkage breaks
  3. water supplies –H to one product and –OH to the other
  4. enzyme-catalysed repetitions release small, absorbable molecules
Enzyme class Bond-containing substrate Main small products
amylase starch shorter sugars, then glucose
protease polypeptide peptides and amino acids
nuclease nucleic acid nucleotides

Condensation produces water while forming a bond. Hydrolysis consumes water while breaking one. The reactions are reverse in chemistry but are controlled by different enzymes in cells.

Read a sugar ring before naming its role

Feature in a ring diagram What it identifies
5 carbon atoms in the molecule a pentose such as ribose
6 carbon atoms in the molecule a hexose such as glucose
carbon-1 –OH below the α-glucose ring α-glucose
carbon-1 –OH above the β-glucose ring β-glucose

α- and β-glucose have the same molecular formula but differ in the position of the –OH attached to carbon 1. Enzymes can distinguish this small geometric difference.

That one orientation controls the polymer route: α-glucose builds starch and glycogen, whereas β-glucose builds cellulose.

Glucose is mobile fuel and a stable building block

Property of glucose Biological consequence
many polar –OH groups dissolves in aqueous cytoplasm and blood plasma
small molecule can be transported and taken up by cells
stable covalent ring can circulate without reacting at random
energy-rich C–H bonds acts directly as a respiratory substrate
functional groups for condensation can be assembled into larger carbohydrates

Photosynthesis supplies glucose; transport brings it to cells; respiration transfers some of its chemical energy to ATP. When immediate fuel is not needed, condensation can divert glucose into storage or structural polysaccharides.

Solubility makes glucose useful in transit but unsuitable for storing large amounts inside a cell: many dissolved glucose molecules would lower water potential and draw in water.

Branching controls access to stored glucose

Starch and glycogen are compact, insoluble stores of α-glucose. Their large molecules do not diffuse away and have far less osmotic effect than the same number of separate glucose molecules.

Store Main structure What the structure changes
amylose in plant starch mostly unbranched α-1,4 chain, coiled compact but relatively few chain ends
amylopectin in plant starch α-1,4 chains with α-1,6 branches more ends available for enzyme action
glycogen in animals and fungi more frequent α-1,6 branching many ends allow rapid glucose release

Branching does not add more energy to each glucose unit. It increases the number of chain ends that enzymes can hydrolyse at the same time, so stored fuel can be mobilised faster.

Cellulose scales weak attractions into strong fibres

  1. β-glucose monomers join by β-1,4 glycosidic bonds.
  2. Alternate monomers are rotated 180°, producing a straight, unbranched chain.
  3. Parallel chains form many hydrogen bonds.
  4. Chains bundle into microfibrils; microfibrils combine into fibres.
Straight beta-glucose chains joined by many hydrogen bonds, bundled into a microfibril within a plant cell wall.

Each hydrogen bond is weak, but many acting in parallel give high tensile strength. Cellulose therefore resists stretching and helps a water-filled plant cell maintain its shape without bursting.

Surface sugars make cells distinguishable

Short carbohydrate chains attached to membrane proteins and lipids project from the outer membrane surface. Together they form the glycocalyx: a chemically varied cell-surface coat.

The exposed carbohydrate patterns act as:

  • identity markers for self/non-self recognition
  • binding sites in cell adhesion
  • parts of receptors used in cell signalling

ABO antigens differ in their terminal surface sugars. A recipient's antibodies can bind an unfamiliar antigen and agglutinate donor red cells, showing that small carbohydrate differences can have whole-organism consequences.

Red blood cells of groups A, B, AB and O showing the presence or absence of A and B surface antigens.

Carbohydrate summary: follow monomer to biological job

Starting form Linkage or arrangement Emergent form Main job
α-glucose α-1,4 with optional α-1,6 branches amylose, amylopectin, glycogen energy storage
β-glucose alternating β-1,4 chain; hydrogen-bonded bundles cellulose fibres tensile support
short surface sugars attached to protein or lipid; exposed outside glycocalyx markers recognition, adhesion, signalling

Condensation builds a covalent linkage and releases water; hydrolysis consumes water and breaks that linkage. Which enzyme acts depends on the bond and substrate.

For a structure–function explanation:

  1. name the monomer or functional group
  2. identify the linkage and three-dimensional arrangement
  3. state the resulting property
  4. connect that property to the biological job

Hydrocarbon regions make lipids avoid water

Long hydrocarbon regions contain mostly non-polar C–C and C–H bonds. They cannot replace the hydrogen-bonding interactions that water molecules make with one another, so water excludes them and lipid molecules aggregate.

Observation Structural explanation
poor solubility in water large non-polar region has little attraction to water
solubility in non-polar solvents similar intermolecular interactions are compatible
fat droplets coalesce hydrophobic regions minimise contact with water

Fats, oils, waxes, phospholipids and steroids are grouped as lipids by physical behaviour, not by one repeating monomer. Lipids are therefore not true polymers.

One ester reaction builds two different lipid types

A fatty-acid carboxyl group reacts with a glycerol hydroxyl group. Condensation releases water and forms an ester bond. Glycerol has three hydroxyl groups, so it provides three attachment positions.

A triglyceride with glycerol and three fatty acids beside a phospholipid with glycerol, two fatty acids and a phosphate head.
Product Components attached to glycerol Overall character
triglyceride 3 fatty acids almost entirely hydrophobic
phospholipid 2 fatty acids + ionised phosphate group amphipathic: polar head, non-polar tails

Glycerol is an alcohol, not a fatty acid. Replacing one fatty acid with phosphate changes not only the parts list but the molecule's behaviour in water.

Double bonds loosen fatty-acid packing

Fatty acid C=C double bonds Typical tail shape
saturated 0 relatively straight
monounsaturated 1 one cis kink
polyunsaturated 2 or more several kinks
Straight saturated and kinked unsaturated fatty-acid structures with space-filling models and tightly versus loosely packed triglycerides.

More cis double bonds prevent neighbouring tails from approaching closely. Intermolecular attractions are weaker, so less thermal energy is needed to separate the molecules and the melting point falls.

At the same temperature, tightly packed saturated lipids are more likely to be solid; more unsaturated lipids are more likely to remain fluid.

Triglycerides are dense, long-term energy stores

Storage property Triglyceride consequence
highly reduced C–H-rich molecules more than twice the energy per unit mass of carbohydrate
insoluble in water stored without lowering water potential
oxidised completely yields ATP, carbon dioxide and substantial metabolic water
Glycogen and triglyceride entering respiration, comparing rapid carbohydrate use with higher energy yield and metabolic water from fat.

Adipose triglyceride also provides:

  • thermal insulation beneath the skin
  • cushioning around organs
  • buoyancy when stored as low-density blubber

Triglyceride is compact long-term fuel, but it is mobilised less rapidly than branched glycogen and its oxidation requires more oxygen. Storage suitability depends on the biological timescale and demand.

Phospholipids hide their tails to make a barrier

A phospholipid is amphipathic: its ionised phosphate head is hydrophilic, while its two hydrocarbon tails are hydrophobic.

In water, phospholipids arrange so that:

  • heads remain in contact with water
  • tails turn away from water
  • a surface favours a monolayer
  • water on both sides favours a bilayer with tails enclosed inside
A labelled phospholipid and its arrangement as a monolayer at a water surface and a bilayer when surrounded by water.

Self-assembly lowers the exposure of non-polar tails to water. The resulting stable bilayer has a hydrophobic core that restricts many ions and polar solutes, forming the basic boundary of a cell.

A steroid crosses a bilayer through its non-polar core

A steroid has a characteristic core of four fused carbon rings. Cholesterol, oestradiol and testosterone share this framework even though their functional groups differ.

For a non-polar steroid hormone:

  1. the molecule leaves the aqueous phase at the membrane surface
  2. it dissolves in the bilayer's non-polar interior
  3. random molecular motion carries it across
  4. it re-enters the aqueous phase on the other side
Molecule property Passage through the bilayer core
small and mostly non-polar favoured
ionised or strongly polar strongly restricted without a protein route

Crossing the membrane is not the same as travelling freely through blood. Hydrophobic steroids often require carrier proteins in aqueous plasma, then diffuse through target-cell membranes.

Lipid summary: predict behaviour from molecular regions

Structure seen Property predicted Main biological outcome
3 fatty-acid tails on glycerol hydrophobic, highly reduced dense long-term energy store
more cis C=C bonds in tails poorer packing, lower melting point greater fluidity at a given temperature
phosphate head + 2 tails amphipathic self-assembled bilayer barrier
4 fused carbon rings, mostly non-polar lipid-soluble diffusion through bilayer core

Ester condensation joins fatty acids to glycerol. The components retained in the product determine whether it behaves as a hydrophobic store or an amphipathic membrane molecule.

Across carbohydrates and lipids, use the same reasoning chain:

atoms and functional groups → bonds → molecular shape and polarity → interactions with water and other molecules → biological function

Carbon atom properties

[ 4 ]

Outline the chemical properties of carbon that allow it to form diverse compounds.

Macromolecules by condensation

[ 5 ]

Outline the production of a dipeptide by a condensation reaction, showing the structure of a generalized dipeptide.

Digestion by hydrolysis

[ 6 ]

Describe the importance of hydrolysis in digestion.

Form and function of monosaccharides

[ 5 ]

Outline how the properties of glucose are linked to their uses in organisms.

Drawing canvas

Polysaccharides as energy storage

[ 4 ]

Outline how and where energy is stored in plants.

Cellulose structure and function

[ 3 ]

Describe how cellulose is formed from monosaccharides.

Hydrophobic properties of lipids

[ 1 ]

Which substance must be transported in the blood by lipoprotein complexes?

Formation of triglycerides and phospholipids

[ 1 ]

Identify the molecule that was used to form part Y of the triglyceride.

Fatty acids

[ 4 ]

Distinguish between the structures of the different types of fatty acids in food.

Drawing canvas

Triglycerides functions

[ 4 ]

Outline the use of lipids to store energy in humans.

Phospholipid bilayers

[ 2 ]

Annotate the diagram to illustrate the amphipathic nature of phospholipids.

Non-polar steroids

[ 1 ]

Testosterone is a hormone that is important for male reproductive development.

To which group of compounds does testosterone belong?

B1.2 Proteins

Proteins connect amino acid structure, peptide-bond formation, dietary requirements, folding levels, R-group chemistry, denaturation, and functional protein shapes in cells.

Syllabus
First assessment 2025
Topic
B1.2
Level
SL

A shared amino-acid framework, variable R-groups

Every protein amino acid has an α-carbon bonded to an amine group, a carboxyl group, a hydrogen atom and a variable R-group. The shared groups form peptide bonds; the R-group changes charge, polarity, size and reactivity. Proteins contain C, H, O and N, and usually S in sulfur-containing R-groups.

Clean mobile-friendly diagram of a generalized amino acid with a central alpha carbon and labelled amine group, carboxyl group, hydrogen, and R-group. Add a small note that sulfur is present in some amino acids and therefore in many proteins.
  • Amine and carboxyl groups: shared parts that build the repeating backbone.
  • R-group: variable part that changes interactions, folding and function.
  • Proteins contain C, H, O and N; sulfur occurs in proteins with sulfur-bearing R-groups.

Condensation forms peptide bonds

The diagram shows two amino acids forming a dipeptide through a condensation reaction, producing a peptide linkage and water.

The carboxyl group of one amino acid loses OH and the amine group of another loses H. Water is released, and the remaining carbon and nitrogen form a covalent C–N peptide bond.

Two residues form one peptide bond and release one water molecule; joining nn residues forms n−1n-1 peptide bonds and releases n−1n-1 waters. Ribosomes repeat this reaction to assemble a chain with N- and C-termini.

The scarcest amino acid limits protein synthesis

Category Supply to the body
Essential cannot be synthesized in sufficient quantity; must come from food
Non-essential can be produced from other molecules, often by transamination in the liver

Dietary protein → digestion → absorbed amino acids → amino-acid pool → ribosomes. If one required essential amino acid is scarce, it becomes limiting and synthesis of proteins containing it slows even when other amino acids are abundant.

A varied, sufficient plant-based diet can supply all essential amino acids. “Non-essential” means synthesizable, not unimportant.

Sequence order creates enormous protein diversity

Protein variety depends on amino-acid type, number and order.

P=AnP=A^n

PP counts sequences, AA amino-acid types and nn chain length. With 20 coded amino acids, P=20nP=20^n and 205=3,200,00020^5=3{,}200{,}000. Genes specify residue order; the proteome is the set of proteins a cell, tissue or organism expresses. Sequence positions R-groups and creates folding possibilities, although not every sequence is functional.

Heat and pH can denature a protein

A folded protein loses its precise shape when heat or extreme pH disrupts stabilizing interactions.
Change Molecular effect Consequence
High temperature weak interactions break fold and binding surfaces, including active sites, change
Extreme pH R-group charges change ionic attractions and H-bonds break

Denaturation changes conformation and function but usually leaves the amino-acid sequence intact. Refolding requires the original interactions to reform before aggregation.

Checkpoint: build a protein, then identify what can limit it

Shared amino-acid groups condense → peptide bonds build a directional backbone → genetic information specifies residue order → positioned R-groups create folding possibilities.

Limiting change Mechanism Consequence
Essential amino acid unavailable a required monomer is missing synthesis of affected proteins slows
High temperature stabilizing interactions are disrupted conformation and function may be lost
pH away from optimum R-group charges change ionic attractions and H-bond patterns can be disrupted

Generalized amino acid structure

[ 3 ]

The molecules of all amino acids include an amine group, a carboxyl group and an R-group. Draw a diagram to show the structure of an amino acid molecule.

Drawing canvas

Condensation reactions

[ 4 ]

Draw molecular diagrams to show the condensation reaction between two amino acids to form a dipeptide.

Drawing canvas

Dietary amino acids

[ 2 ]

Some of the twenty amino acids that are linked together to make polypeptides in human cells are essential in the diet and others are not. Distinguish between essential and non-essential amino acids.

Infinite variety of peptide chains

[ 7 ]

Cells produce a large variety of proteins with different sequences of amino acids. Explain how this is done.

Effect of pH and temperature

[ 4 ]

Outline the process of protein denaturation.

B2.1 Membranes and membrane transport

Membranes and membrane transport link bilayer structure, membrane proteins, selective permeability, gradients, and vesicle movement to cellular control; Students connect membrane structure to transport mechanisms across cellular boundaries.

Syllabus
First assessment 2025
Topic
B2.1
Level
SL

Amphipathic Lipids Close into a Bilayer

A phospholipid has a hydrophilic phosphate head and two hydrophobic fatty-acid tails. In water, these interactions drive spontaneous bilayer formation.

Bilayer formation from phospholipids in water, starting from scattered molecules and ending with a closed bilayer vesicle.

heads face water + tails hide from water → continuous bilayer → exposed edges close → sealed membrane or vesicle

The Hydrophobic Core Creates Unequal Permeability

The bilayer core allows small non-polar molecules through most easily, slows small uncharged polar molecules, and strongly blocks ions and large hydrophilic solutes.

O₂ and CO₂ → simple diffusion.
Water → limited bilayer diffusion, much faster through aquaporins.
Ions, glucose and large polar molecules → specific proteins or vesicles.

A membrane separates aqueous compartments because it is selectively permeable, not completely impermeable.

Random Motion Produces Net Diffusion

Diffusion is passive net movement from higher to lower concentration, driven by random kinetic motion. Particles continue moving both ways at equilibrium, but net movement becomes zero.

Show gradient-driven membrane crossing so the learner can track Simple Diffusion.

Steeper gradient + larger surface area + higher temperature → faster diffusion. Greater distance or membrane thickness → slower diffusion.

Protein Position Constrains Membrane Function

Integral proteins enter the hydrophobic bilayer and may span it; peripheral proteins attach to one membrane surface or to another protein.

The figure shows peripheral and integral proteins of the plasma membrane.

Integral: channels, carriers, pumps, receptors, enzymes.
Peripheral: signalling partners, enzymes, cytoskeletal anchors and scaffolds.

Osmosis Follows a Water-Potential Difference

Osmosis is passive net movement of water across a partially permeable membrane from higher water potential to lower water potential.

Two solutions separated by a partially permeable membrane: hypotonic left, hypertonic right, water arrow to hypertonic side.

Lower solute concentration → higher water potential.
Higher solute concentration → lower water potential.
Aquaporins raise the rate but do not change the direction.

Channels Provide Selective Downhill Routes

A channel is a hydrophilic pore that permits selected ions or molecules to diffuse down an electrochemical gradient without ATP.

Show hydrophilic pore selectivity so the learner can choose The Right Channel.

Pore diameter + charge + chemical lining determine selectivity. Some channels remain open; gated channels change between closed and open states.

ATP Drives a Pump Uphill

A pump binds a specific solute and couples ATP hydrolysis to a shape change that moves it against its concentration or electrochemical gradient.

Show ATP-driven pumping cycle so the learner can how Pumps Spend ATP.

bind on one side → ATP transfers energy, often by phosphorylation → conformation changes → solute released uphill → pump resets

Selectivity Emerges from Lipids, Proteins and Energy

Choose a transport route from particle chemistry and gradient direction: the bilayer sorts by size and polarity; proteins add molecular recognition; ATP permits uphill movement.

Show compare transport routes by particle property so the learner can read Selective Permeability.

small non-polar + downhill → simple diffusion
ion/polar + downhill → channel or carrier
solute + uphill → pump or coupled transporter
very large cargo → vesicle

The Glycocalyx Forms an Outward Cell Interface

Short carbohydrate chains on glycoproteins and glycolipids project only from the extracellular membrane surface. Together they form the glycocalyx.

recognition + cell adhesion + receptor interactions + antigen identity + hydration and protection at the cell surface

The carbohydrate chain does not span the bilayer and is not exposed to the cytoplasm; its orientation records membrane asymmetry.

Evidence Supports a Fluid Protein Mosaic

The fluid mosaic model describes laterally mobile lipids and many proteins arranged asymmetrically in a phospholipid bilayer.

A labeled lipid bilayer shows a protein traversing the membrane, proteins attached to one side, and a channel protein forming a pore toward the cell interior.

freeze fracture → particles within membrane faces
protein extraction → integral vs peripheral attachment
fluorescent cell fusion → labelled proteins spread laterally

SL Summary: Choose a Membrane Route

Particle property → gradient → route → energy.
Non-polar: bilayer. Water: osmosis/aquaporin. Ion or polar solute downhill: channel/carrier. Uphill: ATP-coupled pump.

The bilayer creates the barrier; proteins make it selective; carbohydrates create an outward interface; component mobility makes the membrane adaptable.

Lipid bilayers as basis

[ 8 ]

Cell membranes separate aqueous environments in cells. Explain how the properties of phospholipids help to maintain the structure of cell membranes.

Drawing canvas

Bilayers as barriers

[ 1 ]

Neural pathways in living brains can now be mapped by tracking the movement of water molecules inside axons. What keeps water molecules inside axons?

Simple diffusion

[ 3 ]

Explain how the rate of diffusion of oxygen into a cell is affected by the concentration of oxygen outside of the cell.

Integral and peripheral proteins

[ 4 ]

Describe the functions of proteins in cell membranes.

Osmosis and aquaporins

[ 4 ]

Describe transport across cell membranes by osmosis.

Channel proteins

[ 3 ]

Explain facilitated diffusion.

Pump proteins

[ 3 ]

Calcium is absorbed from food in the human gut by both active and passive processes. Outline active transport, including the benefits of the process.

Selectivity in permeability

[ 1 ]

Which molecule is paired with the component of the cell membrane that allows it to pass through the membrane?

Molecule

Component of the
cell membrane

insulin

aquaporin

glycogen

channel protein

oestradiol

phospholipid bilayer

carbon dioxide

pump protein

Glycoproteins and glycolipids

[ 1 ]

Which part of the membrane allows cell recognition?

Fluid mosaic model

[ 6 ]

Draw and label a diagram to show the structure of membranes.

Drawing canvas

B2.2 Organelles and compartmentalization

Organelles and compartmentalization explain how eukaryotic cells divide work among specialized structures, controlled internal spaces, and directed vesicle transport routes.

Syllabus
First assessment 2025
Topic
B2.2
Level
SL

Compartments Turn One Cell into Many Workspaces

An organelle is a distinct cellular subunit adapted for a particular function. Membranes create local conditions, concentrate enzymes and substrates, and isolate incompatible reactions.

Cutaway diagram of a eukaryotic cell showing the nucleus, mitochondrion, rough endoplasmic reticulum, Golgi apparatus and lysosome as distinct compartments.

boundary → controlled composition → efficient reaction conditions; vesicles and transport proteins then connect the separate spaces into one coordinated cell

The Nucleus Separates RNA Processing from Translation

The nuclear envelope keeps DNA and transcription in the nucleus while translation occurs on cytoplasmic ribosomes. This separation permits pre-mRNA processing before mature mRNA reaches a ribosome.

The figure shows a polysome.

DNA transcription → 5′ cap, intron removal and poly-A tail → mature mRNA export through a nuclear pore → several ribosomes can translate it as a polysome

SL Summary: Explain the Advantage, Not Just the Organelle

  • organelle membrane → selected molecules and conditions → faster, regulated pathways
  • nucleus separated from cytoplasm → RNA processing before translation → controlled gene expression
  • distinct cytoplasmic spaces → incompatible reactions remain apart → simultaneous specialized work

For any compartment: name its boundary → state what differs across it → connect that difference to a function.

Organelles as discrete subunits

[ 7 ]

Describe the organelles and other structures in animal cells that are visible in electron micrographs.

Advantages of compartmentalization

[ 4 ]

Discuss the use of membranes for compartmentalization in eukaryotic cells.

B2.3 Cell specialization

Cell specialization links selective gene expression, stem cell potency, cell size, exchange surfaces, and specialized tissues to biological function in multicellular organisms.

Syllabus
First assessment 2025
Topic
B2.3
Level
SL

Differentiation changes gene activity, not the genome

A zygote divides by mitosis to produce unspecialized cells with nearly the same genome. Differentiation occurs when different cells express different subsets of those genes.

1

A developmental signal activates or represses regulatory genes.

2

The pattern of transcription changes, so different messenger RNAs are produced.

3

Translation produces a cell-specific set of proteins.

4

Those proteins change cell structure, metabolism and behaviour.

A neuron and a muscle cell differ mainly because they use the shared genome differently—not because each cell type was given a different set of genes.

A morphogen gradient turns position into cell fate

A morphogen is an extracellular signalling molecule distributed as a concentration gradient across developing tissue. Cells at different positions are exposed to different concentrations.

Local exposure Gene-regulatory response Developmental consequence
above a high threshold one set of genes switches on or off one cell fate is stabilized
between thresholds a different regulatory cascade begins an intermediate fate develops
below a lower threshold neither higher-threshold response occurs another fate develops

The morphogen does not build a body part directly. Its concentration supplies positional information; altered gene expression then changes proteins, growth and differentiation.

Stem cells preserve themselves and preserve options

Defining property What it means Why it matters
self-renewal repeated division produces cells that remain undifferentiated the stem-cell pool is maintained
potency a cell can differentiate into one or more mature cell types new specialized cells can be supplied

A stem-cell population must balance these outcomes. If every daughter differentiated, the reserve would be depleted; if none differentiated, the tissue would not gain the mature cells it needs.

Embryonic stem cells generally retain broader potency. Most adult stem cells have a narrower range but remain essential for tissue maintenance and repair.

Potency narrows as developmental commitment increases

Developmental sequence from totipotent early embryonic cells to pluripotent blastocyst cells, multipotent tissue stem cells and specialized cells.
Potency Typical developmental source Possible descendants
totipotent zygote and first few divisions all body cells and extraembryonic tissues such as placenta
pluripotent inner cell mass of the blastocyst all body cell types, but not placenta or a totipotent cell
multipotent adult tissue stem-cell niches a restricted family of cells in one tissue or organ

Development usually moves from broad potential toward commitment: totipotent → pluripotent → multipotent → specialized. A narrower potency does not mean the cell is less useful; it means fewer fates remain available.

A niche decides whether an adult stem cell waits, renews or commits

A stem-cell niche is a local microenvironment whose neighbouring cells, extracellular matrix and signalling molecules maintain stem cells or change their behaviour.

Adult niche Stem cells and local control Tissue outcome
bone marrow osteoblastic and vascular signals regulate haematopoietic stem-cell dormancy, renewal and mobilization red blood cells, white blood cells and platelets are continually replaced
hair-follicle bulge signals activate multipotent cells during a growth phase and allow dormancy during rest the follicle and hair regenerate cyclically

The niche is not simply a storage site. It is a decision environment that can keep a cell undifferentiated, expand the stem-cell pool or trigger commitment to a mature lineage.

Useful cell size depends on the job

Specialized cell Useful dimension Function served
erythrocyte small and flexible passes through narrow capillaries
secondary oocyte large cytoplasmic volume stores organelles, nutrients and regulatory molecules for early development
neuron very long axon carries an impulse over a long distance without a chain of intervening cells
skeletal muscle fibre long multinucleate cell coordinates force along an extended contractile unit

Do not call a cell ‘adapted’ merely because it is large or small. Name the dimension that changes, then show how that dimension improves a specific task.

Volume outgrows the surface that must supply it

Surface area sets the capacity for exchange across the plasma membrane. Volume represents metabolically active cytoplasm that consumes nutrients and oxygen and produces wastes and heat.

SA=6l2V=l3SAV=6l\begin{aligned}\mathrm{SA}&=6l^2 & V&=l^3\\[4pt]\frac{\mathrm{SA}}{V}&=\frac{6}{l}\end{aligned}

Cube side, ll Surface area Volume SA:V
1 6 1 6:1
2 24 8 3:1
4 96 64 1.5:1

As a similarly shaped cell grows, total surface area still increases—but volume increases faster, so SA:V falls and internal diffusion paths lengthen. Exchange can no longer keep pace with demand, limiting cell size unless shape, division or internal transport changes.

SL summary: connect fate, form and exchange

  • Differentiation: signal or morphogen position → selective gene expression → cell-specific proteins → specialized structure and function
  • Stem-cell control: self-renewal preserves the reserve; potency describes possible fates; a niche regulates waiting, renewal or commitment
  • Developmental direction: totipotent → pluripotent → multipotent → specialized
  • Cell dimensions are useful only in relation to a job such as storage, long-distance signalling or coordinated contraction.
  • Exchange capacity scales with surface area, while metabolic demand scales with volume.
  • For similar shapes, growth lowers SA:V because volume increases faster than surface area.

A complete explanation names the signal or structural feature, states what it changes inside or around the cell, and links that change to the biological result.

Differentiation after fertilization

[ 1 ]

The micrograph of a section through a plant stem shows at least ten different types of cells.

What explains the differences between these cells?

Properties of stem cells

[ 5 ]

Describe the characteristics of stem cells that make them potentially useful in medicine.

Types of stem cells

[ 1 ]

Which is a description of stem cells?

Cell size as specialization

[ 1 ]

Which specialized cell has the largest volume?

Surface area-to-volume ratios

[ 7 ]

Explain the importance of surface area to volume ratio as a factor limiting cell size.

B3.1 Gas exchange

Gas exchange links animal ventilation, alveolar diffusion, leaf stomata, transpiration and haemoglobin affinity to oxygen supply and carbon dioxide removal.

Syllabus
First assessment 2025
Topic
B3.1
Level
SL

Gas Exchange Must Match Cellular Respiration

Respiration consumes O₂ and produces CO₂. A gas-exchange system is needed when diffusion across the outer body surface cannot move these gases fast enough for all cells.

small/thin organism → high SA:V + short diffusion path → direct exchange may suffice
large or active organism → lower SA:V + long internal distances + high demand → specialized surface, ventilation and transport

The system does not create diffusion. It maintains a large area, a short path and steep partial-pressure gradients so diffusion can meet metabolic demand.

Four Properties Increase Diffusion Rate

Fick’s law predicts faster gas transfer with greater surface area and partial-pressure difference, and with a thinner diffusion barrier. A moist, permeable surface lets gases dissolve before crossing.

Mobile-friendly annotated alveolus-capillary diagram showing a thin moist permeable exchange surface, large combined area, short diffusion path, and opposite directions of oxygen and carbon dioxide diffusion.

For every claimed adaptation, name the changed variable: area, gradient, distance or permeability. Then connect it to faster O₂ or CO₂ diffusion.

Ventilation and Blood Flow Preserve Opposite Gradients

At an alveolus, ventilation replaces air while perfusion replaces blood. Together they keep alveolar O₂ above venous-blood O₂ and venous-blood CO₂ above alveolar CO₂.

alveolar air high O₂ → O₂ diffuses into blood → haemoglobin binding removes dissolved O₂
venous blood high CO₂ → CO₂ diffuses into alveolus → expiration removes it

Reduced ventilation lowers alveolar O₂; reduced perfusion leaves no blood to load. Either mismatch lowers whole-system exchange even if the membrane is intact.

Alveoli Combine Area, Thinness and Gradient Maintenance

Millions of alveoli create a very large moist surface. Type I pneumocytes and capillary endothelium form a short diffusion path; elastic fibres support recoil and surfactant limits collapse.

airway branching → alveolar air → type I pneumocyte → basement membrane region → capillary endothelium → plasma → erythrocyte haemoglobin

Muscle Contraction Creates the Pressure Difference for Airflow

Air moves because thoracic volume changes alter lung pressure. Inspiration is active: diaphragm and external intercostals contract, increasing volume and lowering pressure below atmospheric.

Show thorax-ventilation-sequence so the learner can trace Inspiration and Expiration.

inspiration: muscles contract → thorax expands → pressure falls → air enters
quiet expiration: muscles relax + elastic recoil → volume falls → pressure rises → air leaves

Read a Spirometer Trace as Volume over Time

Tidal volume is the change during one normal breath. Breathing rate is cycles per minute. Ventilation rate = tidal volume × breathing rate; vital capacity spans maximum inspiration to maximum expiration.

1 identify axes and calibration
2 measure peak-to-trough height for volume
3 count complete cycles across a known time
4 multiply using consistent units
5 separate amplitude change from frequency change

A Stoma Trades Carbon Entry for Water Loss

CO₂ enters and water vapour exits mainly through stomata. Guard cells change pore width, balancing photosynthetic demand against dehydration risk.

Leaf gas-exchange tradeoff diagram showing waxy cuticle limiting water loss, lower epidermal stomata with guard cells controlling pores, spongy mesophyll air spaces for diffusion, and veins supplying water and removing assimilates.

CO₂: atmosphere → stoma → substomatal air space → moist mesophyll wall → photosynthetic cell
H₂O: xylem → mesophyll wall → evaporation → air spaces → diffusion through stoma

Leaf Layers Coordinate Light, Gas and Transport

Leaf tissue distribution places palisade cells near light, spongy mesophyll beside interconnected air spaces, stomata in epidermis and vascular bundles within diffusion range of cells.

Clean labelled dicot leaf cross-section with cuticle, epidermis, palisade mesophyll, spongy mesophyll air spaces, stomata, xylem, and phloem, optimized for mobile reading.

upper epidermis/cuticle → light entry + water conservation
palisade → chloroplast-rich light capture
spongy mesophyll → moist exchange area + air spaces
xylem/phloem → water supply + assimilate export

Transpiration Responds to the Vapour Gradient and Stomata

Transpiration is water loss by evaporation from mesophyll surfaces followed by diffusion of water vapour out through stomata. Its rate depends on stomatal aperture and the leaf-to-air vapour gradient.

  • light often opens stomata → rate rises
  • higher temperature → faster evaporation and often steeper gradient
  • higher humidity → smaller gradient → rate falls
  • wind removes moist boundary air → rate rises until stomata respond

Stomatal Density Measures Pores per Leaf Area

Stomatal density = number of stomata counted ÷ sampled epidermal area. It estimates potential pore abundance, while aperture determines how open those pores are at a given moment.

A hand applies clear nail varnish with a brush to a small area of a green leaf beside an open bottle labeled clear nail varnish.

clear nail-varnish impression → peel and mount → calibrate field area → count stomata in random fields → calculate each density → repeat and report variation

SL Summary: One Diffusion Model

Feature Lung Leaf
area many alveoli broad blade + mesophyll walls
path thin barrier thin leaf + air spaces
gradient air + blood flow CO₂ use + stomata

Spirometry measures ventilation; a potometer estimates water uptake; a leaf cast measures stomatal density. Match each method to its direct measurement.

Gas exchange as vital function

[ 3 ]

Outline the process of gas exchange necessary for aerobic respiration in a unicellular eukaryotic organism.

Properties of gas-exchange surfaces

[ 7 ]

Explain the process of gas exchange taking place in the alveoli.

Maintaining concentration gradients

[ 4 ]

Describe how a concentration gradient of oxygen is maintained between the lungs and blood capillaries.

Mammalian lung adaptations

[ 6 ]

A supply of oxygen is needed for aerobic respiration in mitochondria. Describe the features of alveoli in human lungs that adapt them for efficient absorption of oxygen.

Lung ventilation

[ 9 ]

Explain the mechanism of ventilation in the lungs in order to promote gas exchange for cell respiration.

Lung volume measurements

[ 2 ]

Outline how ventilation rate could have been monitored in this study.

Leaf gas exchange adaptations

[ 2 ]

Explain the roles of two leaf structures that help with the process of gas exchange in the leaf.

Leaf tissue distribution

[ 8 ]

Explain how the distribution of tissues in the leaf of a dicotyledonous plant is adapted to production and distribution of products of photosynthesis.

Drawing canvas

Transpiration exam focus

[ 8 ]

Explain how abiotic factors affect the rate of transpiration in terrestrial plants.

Stomatal density

[ 1 ]

Outline how stomatal density in busy Lizzie leaves can be estimated within a known field of view.

B3.2 Transport

Transport systems move materials through animal blood vessels, plant xylem and phloem, and heart-driven circuits using specialised structures and pressure gradients.

Syllabus
First assessment 2025
Topic
B3.2
Level
SL

Capillaries Slow Blood to Enable Exchange

Capillaries are narrow, highly branched exchange vessels whose structure maximizes contact with tissues while minimizing diffusion distance.

Simple capillary bed beside body cells, showing branching, single-cell wall, and one fenestration allowing plasma to leave.

Branching produces a very large total surface area. A lumen only slightly wider than a red blood cell brings blood close to the wall, and a one-cell-thick endothelium provides a short path for diffusion.

Arteries and Veins Solve Different Pressure Problems

Arteries carry blood away from the heart under higher pressure; veins return blood at lower pressure and need valves and muscle assistance.

Thick elastic and muscular artery walls absorb pulse pressure. Veins have wider lumens, thinner walls and valves that prevent backflow as surrounding muscles compress them.

Artery Walls Store and Redistribute Pulse Energy

Arteries have thick muscular and elastic walls that maintain a lumen and smooth pressure pulses from the heart.

Elastic recoil helps keep blood moving between heartbeats, while smooth muscle adjusts diameter and resistance. The wall must withstand higher pressure than a vein.

Separate pulse smoothing from resistance control: which wall feature does each job?

Measure Pulse as Repeated Arterial Pressure Waves

Pulse rate is the number of arterial pressure waves per minute, normally corresponding to ventricular contractions.

Place fingertips—not the thumb—lightly over the radial artery at the wrist or the carotid artery in the neck. Count waves for a known interval while the subject is still and use a full minute when maximum accuracy is needed.

Counting 18 pulses in 15 s gives 18 × (60/15) = 72 beats min⁻¹. Repeat after recovery and compare with a digital heart-rate sensor recorded over the same interval.

Valves and Muscles Return Low-Pressure Venous Blood

Veins use large lumens, valves and skeletal-muscle contractions to return blood to the heart despite low pressure.

Two-state vein diagram showing a valve closed during backflow and open during forward flow while leg muscles squeeze the vessel.

A wide lumen reduces resistance, valves stop reverse flow and muscle compression raises local pressure. Breathing movements can also help draw venous blood toward the chest.

Coronary Occlusion Cuts ATP Supply to Heart Muscle

A ruptured atherosclerotic plaque can trigger a thrombus that blocks a coronary artery. Oxygen delivery falls, aerobic ATP production fails and prolonged ischaemia kills cardiac muscle: myocardial infarction.

  • plaque grows beneath damaged endothelium → the lumen narrows and the wall loses elasticity
  • plaque rupture → platelets and clotting form a thrombus
  • coronary occlusion → oxygen falls → aerobic ATP production fails → cardiac muscle dies

Transpiration Pulls One Cohesive Water Column

Transpiration creates tension—a negative pressure potential—that pulls a continuous water column from roots to leaves through xylem.

Water evaporating from moist mesophyll cell walls draws replacement water through the wall by capillary action and out of nearby xylem. This lowers pressure in the leaf xylem and transmits tension down the vessel.

Dead, Lignified Xylem Forms a Low-Resistance Tube

Mature xylem vessel elements form dead, hollow, lignified tubes adapted to carry water under tension with little resistance.

Scanning electron micrograph shows spiral xylem vessels.

Lignin thickens and waterproofs the wall and prevents collapse under negative pressure. Unlignified pits allow water to enter or leave laterally, bypass a blockage, and move between xylem and surrounding tissue.

A Dicot Stem Separates Water and Assimilate Routes

A transverse section of a young dicot stem has an outer epidermis, cortex beneath it, vascular bundles arranged in a ring and a central pith.

Within each vascular bundle, phloem lies toward the outside, xylem toward the centre and cambium between them. The ring links transport around the stem while lignified xylem and supporting fibres add strength.

A Dicot Root Combines Absorption with Selective Entry

A transverse section of a young dicot root has an outer epidermis, a broad cortex and a central vascular cylinder containing xylem and phloem.

A labeled root diagram shows root hairs and a transverse section identifying the epidermis, cortex, endodermis, Casparian strip, phloem, and central xylem.

Root hairs extend from epidermal cells to increase absorption area. The endodermis forms the inner boundary of the cortex, surrounding the central vascular tissue and controlling entry to xylem.

SL Summary: Flow Structures

Route Structural solution
artery elastic-muscular wall for high pressure
capillary one-cell wall + many branches for exchange
vein wide lumen + valves for low-pressure return
xylem hollow lignified tube for tension

Capillary adaptations

[ 3 ]

Explain how the structure of capillaries relates to their functions.

Artery and vein structure

[ 8 ]

Explain the structures and functions of arteries and veins.

Artery adaptations

[ 5 ]

Explain how the structure of an artery allows it to carry out its function efficiently.

Pulse rate measurement

[ 2 ]

Outline one method that the researchers could have used to measure heart rate in this study.

Vein adaptations

[ 2 ]

Deduce what the experiment demonstrated about the circulation of blood.

Coronary artery occlusion

[ 2 ]

Outline the causes and consequences of blood clot formation in coronary arteries.

Water transport in plants

[ 8 ]

Explain the process of water uptake and transport by plants.

Xylem vessel adaptations

[ 3 ]

Joints are part of the musculoskeletal system of animals, which provides support and movement to the body. Xylem provides support in plants and also transports water and minerals.

Explain the adaptations of xylem for its functions.

Stem tissue distribution

[ 2 ]

Describe the distribution of vascular tissues in the stem of dicotyledonous plants.

Root tissue distribution

[ 2 ]

Label tissues X and Y .

B4.1 Adaptation to environment

Adaptation to environment explains how abiotic conditions, tolerance ranges, habitats and biomes shape organism survival, distribution and specialised traits over time.

Syllabus
First assessment 2025
Topic
B4.1
Level
SL

A Habitat Is a Place Plus Its Conditions

A habitat is the physical and biological environment where an organism lives. Describe location together with resources, abiotic conditions and interactions.

Static ecosystem scene showing one broad habitat and two microhabitats within it, such as bark crevices and damp soil beneath leaf litter, with labels for geographic location, physical position, and ecosystem type.

A microhabitat is a smaller local environment with distinct conditions. A niche goes further by describing how a species uses resources and interacts within its habitat.

An Adaptation Solves a Particular Abiotic Challenge

An adaptation is an inherited feature that increases survival or reproduction under particular conditions. Explain it as challenge → feature → physical effect → fitness benefit.

Micrographs show a cross-section of a marram grass blade and a magnified section with a thick cuticle, thick-walled epidermal cells, and a folded, hairy inner epidermis that traps water vapour.

marram: rolled leaf + hairs + sunken stomata → humid trapped air → smaller water-vapour gradient
mangrove: aerial roots and salt exclusion/excretion → aeration and ion balance in saline, anoxic mud

Abiotic Limits Filter Where a Species Can Persist

Temperature, water, light, salinity, pH, oxygen, minerals and substrate can restrict distribution when they fall outside the range for survival, growth or reproduction.

sample abundance at fixed positions along a transect + measure candidate abiotic variables with calibrated sensors + repeat with equal effort → test whether distribution changes with the gradient

A Tolerance Curve Has an Optimum, Stress Zones and Limits

For one environmental factor, a species has a critical minimum and maximum. Performance is highest near an optimum and declines through zones of physiological stress toward either limit.

Static tolerance curve with abundance on the y-axis and one abiotic factor on the x-axis. Label critical minimum, critical maximum, lower stress zone, optimum zone, upper stress zone, and intolerance beyond both limits.

choose an x-value → locate performance on the curve → classify optimum, stress or intolerance → remember another factor may still prevent the species occurring

Coral Reefs Require Several Conditions at Once

Reef-building corals depend on warm, shallow, clear, well-lit seawater with suitable salinity and carbonate chemistry. Photosynthetic symbionts supply much of the energy supporting calcification.

Coral reef system diagram showing shallow sunlit water, coral polyps with zooxanthellae, clear water column, saline seawater, and side arrows indicating limiting factors such as sediment, reduced light, cold upwelling, and lower pH.

greater depth or turbidity → less light
thermal stress → bleaching risk
lower pH → harder CaCO₃ deposition
sediment/nutrient disturbance → damaged or shaded coral

Climate Narrows the Likely Terrestrial Biome

Long-term temperature and rainfall are the main predictors of terrestrial biomes. Seasonality and insolation refine the prediction because they change water availability, growing season and productivity.

Show simplified climograph and named biome examples so the learner can predict A Biome From Climate.

warm + wet year-round → tropical forest
warm + very dry → hot desert
cold + short growing season → tundra
seasonal/moderate rain → grassland or temperate forest, depending on water balance

Similar Climates Can Produce Similar Biomes

A biome is a group of ecosystems with similar abiotic conditions and broadly similar communities. It is defined by climate and dominant vegetation, not by a single species list or a political boundary.

Separated regions can experience the same selection pressures. Natural selection may therefore favour independently evolved features with similar functions—convergent evolution—so their communities can have similar forms even though the species differ.

Climate predicts the broad biome; soil, altitude, fire, grazing and local history can shift the ecosystem found at one site, so biome boundaries are gradual rather than perfectly sharp.

Desert Species Evade Heat or Conserve Water

Hot deserts combine intense daytime heat, large temperature changes and scarce, unpredictable water. Survival depends on evading the worst conditions or enduring them while minimizing water loss.

  • cactus: succulent photosynthetic stem stores water; spines replace broad leaves and reduce leaf area
  • kangaroo rat: nocturnal burrowing avoids daytime heat; concentrated urine and no sweating reduce water loss
  • camel: variable body temperature and water-conserving excretion reduce losses; hump fat supplies energy and metabolic water

The feature must be linked to its physical effect: a camel's hump stores fat, not liquid water, and a cactus spine helps conserve water because it replaces a leaf and deters herbivores.

Rainforest Species Exploit Layers and Scarce Resources

Tropical rainforests are warm and wet, but light, space and mineral nutrients are unevenly distributed through their vertical layers. Adaptations improve access to these resources or reduce exposure to predators.

Several pitcher plants hang among green rainforest leaves; their modified leaves form deep fluid-filled traps.
  • pitcher plant: modified leaves trap and digest animals → mineral ions supplement nutrient-poor rooting sites
  • flying lizard: skin stretched between extended ribs forms a gliding surface → movement between trees without descending
  • gibbon: long forelimbs, hook-like fingers and mobile shoulders → efficient brachiation through the canopy
  • orchid mantis: flower-like form attracts prey and provides camouflage

Pitcher plants still photosynthesize for carbon and energy; captured animals mainly supply scarce mineral nutrients such as nitrogen.

Summary: Predict Distribution from Environment and Adaptation

measure environment → locate tolerance limits and optimum → predict possible distribution → test abundance in the field → explain how adaptations change performance

microhabitat: local moisture, light and temperature
species range: interacting tolerance, adaptation and dispersal limits
biome: long-term climate filters whole communities; similar pressures can produce convergent forms

Habitat definition

[ 1 ]

Define habitat.

Adaptations to abiotic environment

[ 2 ]

Explain one feature of tree roots that help trees to survive in mangrove swamps.

Abiotic variables affecting distribution

[ 4 ]

Discuss how abiotic factors can affect the distribution of species in an ecosystem.

Range of tolerance of limiting factor

[ 2 ]

Using the data in the graphs, discuss whether species in Group 1 or Group 2 are more likely to be adversely affected by increases in soil temperature due to global warming.

Coral reef formation conditions

[ 2 ]

Outline one way in which reef-building corals are affected by increasing atmospheric carbon dioxide.

Terrestrial biome distribution

[ 3 ]

Outline how the type of stable ecosystem that will develop in an area can be predicted based on climate.

Biomes exam focus

[ 2 ]

State what a biome is.

Adaptations to hot deserts and tropical

[ 7 ]

Describe adaptations that are typical of plants growing in hot deserts throughout the world.

B4.2 Ecological niches

Ecological niches connect species roles, nutrition modes, adaptations and competition to how organisms use resources and interact within communities over time.

Syllabus
First assessment 2025
Topic
B4.2
Level
SL

A Shared Coast Does Not Mean a Shared Niche

A species' niche is its role in a community: the conditions it tolerates, resources it uses, times and places it is active, and interactions that affect survival and reproduction.

Cormorant and shag use different feeding zones and prey in the same rocky coastal habitat.
  • cormorant: feeds nearer shore, often on seabed fish
  • shag: feeds farther offshore in upper water and nests on narrower ledges

Their habitat overlaps, but diet, feeding position and nesting behaviour separate their niches and reduce competition.

Oxygen Draws a Physiological Niche Boundary

Oxygen availability changes which respiration pathways can operate and whether reactive oxygen compounds can be tolerated. That physiology predicts position along an oxygen gradient.

Organism type Response to oxygen Example and likely niche
obligate aerobe requires O₂ for respiration Mycobacterium tuberculosis in oxygenated tissue
obligate anaerobe oxygen is toxic; only anaerobic metabolism methanogens in anoxic sediments or guts
facultative anaerobe uses aerobic respiration when O₂ is present, switches without it E. coli across oxygen-rich and oxygen-poor sites

“Anaerobe” does not always mean oxygen is poisonous: that is true of an obligate anaerobe, whereas a facultative anaerobe can grow on either side of the oxygen boundary.

Classify Nutrition by Inputs and Where Food Is Processed

A nutritional mode specifies the source of carbon and energy and how usable molecules enter cells. The same habitat can contain species with very different routes.

Mode Carbon / food source Decisive process
photoautotrophic inorganic CO₂ light energy drives carbon fixation
holozoic ingested organic matter internal digestion, then absorption
saprotrophic dead organic matter external digestion, then absorption
mixotrophic inorganic and organic carbon combines or switches routes

Do not classify by energy alone: light is an energy source, while carbon dioxide or organic food supplies the carbon atoms used to build biomass.

Photoautotrophs Convert Light Energy and Fix Carbon

Photosynthetic pigments absorb light. The captured energy produces ATP and reducing power, which drive the reduction of carbon dioxide into organic molecules.

light energy → chemical energy
inorganic CO₂ → organic carbon compounds
organic compounds → biomass and respiratory substrate

Plants and algae are eukaryotic photoautotrophs; cyanobacteria are prokaryotic photoautotrophs whose oxygen-releasing photosynthesis helped change Earth's atmosphere. Light supplies energy—not carbon or newly created energy.

Holozoic and Saprotrophic Feeding Differ at Digestion

Holozoic consumer Saprotroph
starts with ingested living or recently killed matter dead matter or waste outside the organism
digestion internal enzymes secreted onto the material
uptake soluble products absorbed from gut soluble products absorbed across surface
examples herbivores, carnivores, omnivores many fungi and bacteria

Saprotrophs release inorganic nutrients that producers can reuse, but energy is not recycled: decomposers respire organic molecules and energy ultimately leaves the ecosystem as heat.

A detritivore ingests dead material and digests it internally, so it is holozoic rather than saprotrophic. Egestion removes undigested food; excretion removes metabolic waste.

A Mixotroph Can Change Its Resource Strategy

A mixotroph combines autotrophic and heterotrophic nutrition. The two contributions need not be equal or simultaneous; conditions can shift which route dominates.

False-colour micrograph of Euglena showing chloroplasts and other internal cell structures.

In light, Euglena can photosynthesize in chloroplasts. It can also take in bacteria by phagocytosis and digest them in food vacuoles. Facultative mixotrophs shift route as light, prey or nutrients change; obligate mixotrophs require both contributions.

Archaea Do Not Share One Nutritional Mode

Archaea form one domain, but different species occupy different metabolic niches. Domain membership does not imply one habitat, carbon source or energy pathway.

Route Energy mechanism Carbon source / example
light-driven pumping retinal protein pumps ions; gradient drives ATP synthase often organic carbon; halobacteria, without oxygenic photosynthesis
chemoautotrophy oxidation of inorganic substances supplies energy CO₂ fixed into organic matter; hydrogen-dependent archaea
heterotrophy organic molecules are oxidized organic carbon; some marine archaea degrade lignin

Methanogens occupy anoxic niches and use electron donors such as hydrogen while producing methane. Their metabolism shows why not all chemical energy entering food webs originally comes from sunlight.

Nutrition Checkpoint: Track Energy, Carbon and Digestion

For any organism, ask:

  • Is oxygen required, toxic or optional?
  • Is energy captured from light, inorganic chemical reactions or organic molecules?
  • Does carbon come from CO₂ or pre-existing organic matter?
  • Is digestion internal, external, both or absent?

photoautotroph ≠ organism that creates energy
holozoic consumer ≠ every heterotroph
detritivore ≠ saprotroph
mixotroph ≠ half-autotroph at all times
archaeon ≠ one fixed metabolism

Tooth Shape Reveals a Food-Processing Job

Tooth Shape and main mechanical job
incisor sharp edge slices or bites off pieces
canine pointed crown grips and tears
premolar broader surface crushes and begins grinding
molar large surface grinds food repeatedly

Dietary inference uses more than one tooth: relative tooth area, cusp shape, enamel wear, jaw robustness and muscle-attachment sites reveal the forces and movements emphasized during feeding.

Form supports a probable processing strategy, not a complete menu. Tools, cooking, ancestry and convergent evolution can weaken a simple tooth-to-diet rule.

Infer Hominid Diet from a Cluster of Skull Features

Evidence pattern Supported inference
gorilla: large post-canine teeth, robust jaw, large chewing muscles and sagittal crest repeated forceful processing of tough vegetation
Paranthropus robustus: megadont cheek teeth, thick enamel and robust mandible high chewing loads from tough or abrasive foods
human: smaller canines and molars, gracile jaw, rounded molar cusps generalized omnivorous processing with less emphasis on forceful grinding

Make the inference from the combined pattern, then state its limit. Tooth wear and muscle attachment strengthen a claim; one isolated feature cannot prove exactly which foods were eaten.

Herbivores and Plants Change Each Other's Selective Environment

Herbivore route to food Plant defence Possible counter-adaptation
chewing mouthparts remove tissue thorns, spines or stinging hairs raise handling cost selective feeding or protected mouthparts
aphid stylet reaches phloem sap tougher tissues or defensive chemistry pectinase helps the stylet pass between cell walls
microbial cellulose digestion low digestibility and toxic compounds symbiotic microbes or detoxifying enzymes

A defence lowers feeding success or raises its cost; it rarely makes a plant invulnerable. If heritable counter-adaptations improve feeding, selection can favour them in the herbivore population, which in turn changes selection on the plant.

Nettle hairs deliver irritants, oleander contains cardiac glycosides and cassava releases cyanide precursors unless processed. Always link the named chemical or structure to how it changes herbivore survival or feeding.

Predation Can Fail at Several Different Stages

Interaction stage Predator advantage Prey resistance
detect acute vision, smell, heat sensing or echolocation camouflage, stillness or hiding
approach stealth or coordinated movement vigilance and wide field of view
capture speed, grasping limbs, claws or venom escape, grouping or erratic movement
handle strong jaws or digestive tolerance armour, spines, toxins or chemical spray

Forward-facing eyes increase binocular overlap for depth estimation; side-facing eyes broaden surveillance. Neither arrangement alone labels every species as predator or prey—the mechanism must be interpreted with behaviour and ecology.

Adaptations often work together: rolling into a ball is useful because a tough exterior then faces the predator, and a stealth predator benefits from both still behaviour and camouflage.

Colour Can Hide, Warn or Deceive

Pattern Information available to predator Result
camouflage prey matches background detection becomes less likely
aposematic colour conspicuous pattern is associated with toxicity or defence experienced predators avoid attack
Batesian mimicry harmless species resembles a defended model predator may avoid the mimic
  • poison dart frog: toxin plus bright warning colour
  • coral snake: defended model with warning bands
  • non-venomous king snake: gains protection by resembling the model
  • bombardier beetle: chemical spray plus warning and escape behaviour

Mimicry works only if predators encounter and avoid the defended model often enough. Conspicuous colour is therefore not automatically poor camouflage; its function depends on the receiver's learned or evolved response.

Forest Plants Pay Different Costs to Reach Light

A forest canopy intercepts most incoming light, creating a steep vertical gradient. Plant form determines how a species reaches light and which costs it accepts.

Forest cross-section showing canopy trees, lianas, epiphytes, a strangler fig and shade plants at different heights.
  • canopy tree: builds costly support and transport tissue for first access to light
  • liana: roots in soil but uses a tree for support
  • epiphyte: starts high on a branch, gaining light but facing water and nutrient limits
  • shade plant: persists in weak filtered light with large leaves and suitable pigments

A strangler fig can surround and eventually kill its host, while an ordinary epiphyte uses support without necessarily harming it. Position changes access to light, but also water, minerals and pollinators.

Interactions Contract a Potential Niche into a Realized Niche

The fundamental niche is the range of conditions and resources a species could use from its adaptations and tolerance limits. The realized niche is the range it actually occupies after competition, predation, mutualism and dispersal act.

Connell-style shore comparison showing Chthamalus expanding downshore when the competing Semibalanus is removed.

Observe the focal species with the competitor present → remove the competitor while keeping abiotic conditions comparable → observe expansion into previously unoccupied space → infer that competition had narrowed the realized niche.

A realized niche is often narrower than the fundamental niche, but beneficial interactions can also make occupancy possible. Absence alone does not reveal which interaction or dispersal barrier is responsible.

Complete Niche Overlap Makes Coexistence Unstable

Competitive exclusion predicts that two species cannot coexist indefinitely under stable conditions if they occupy effectively identical niches and depend on the same limiting resource.

In Gause's cultures, Paramecium aurelia and P. caudatum both grew when cultured separately. In mixed culture, P. aurelia increased while P. caudatum declined to exclusion. The difference between separate and mixed cultures identifies interspecific competition.

Ecological situation Expected outcome
strong overlap for one limiting resource one population declines or is locally excluded
partitioning by food, space or time overlap falls and coexistence becomes possible
changing conditions competitive advantage may alternate

The principle is conditional, not a claim that competitors never coexist. Field communities can retain competition when niches overlap only partly or environments vary.

Summary: Build a Niche from Constraints and Interactions

A niche connects abiotic tolerance + resource acquisition + activity and form + interactions. These dimensions explain how a species survives and reproduces, not merely where it is found.

potential conditions and resources → fundamental niche
competition, predation, mutualism and dispersal → realized niche
strong overlap for a limiting resource → competition
partitioning by food, space or time → reduced overlap and possible coexistence

To explain an adaptation, name the challenge, the feature or behaviour, its physical or physiological effect, and the consequence for survival or reproduction within that niche.

Ecological niche

[ 3 ]

Explain the niche concept.

Oxygen tolerance

[ 1 ]

Seaweeds are obligate aerobes. Describe an environmental condition required for seaweed survival.

Photosynthesis as nutrition mode

[ 3 ]

There is evidence that prokaryotes were responsible for changes in the atmospheric gases 3.5 billion years ago. Outline the role of bacteria in producing an oxygen-rich atmosphere.

Holozoic nutrition

[ 1 ]

Outline the method of nutrition carried out by P. caudatum.

Mixotrophic nutrition

[ 1 ]

Outline the reason that some species of protists are classified as mixotrophs.

Saprotrophic nutrition

[ 1 ]

Which organism can best be described as a saprotroph?

Diversity in archaea

[ 3 ]

Using the table, distinguish between chemoautotrophs, photoheterotrophs and chemoheterotrophs.

Energy sourcesCarbon sources
chemoautotrophs____\_\_\_\_____\_\_\_\_____\_\_\_\_____\_\_\_\_____\_\_\_\_____\_\_\_\_
____\_\_\_\_____\_\_\_\_
photoheterotrophs____\_\_\_\_____\_\_\_\_
____\_\_\_\_____\_\_\_\_
chemoheterotrophs____\_\_\_\_____\_\_\_\_
____\_\_\_\_

Herbivore and plant adaptations

[ 4 ]

Outline adaptations of animals to herbivory and ways in which plants are adapted to resist herbivores.

Predator and prey adaptations

[ 2 ]

The graph shows that distasteful butterflies tend to have a lower ability to escape from predators than palatable butterflies. Suggest reasons for this trend.

Fundamental vs. realized niche

[ 3 ]

Suggest how this experiment shows that pigeon droppings represent a realized ecological niche for C. neoformans and a fundamental (but not a realized) niche for C. gattii.

Competitive exclusion

[ 1 ]

Paramecium aurelia and Paramecium caudatum are two species of paramecium that grow well individually. Scientists grew these two species of paramecium together, and the result is shown in the graph.

What could be deduced from this data?