A4.1 Evolution and speciation

Evolution and speciation explain how heritable variation, molecular evidence, selection, isolation, and chromosome change produce population divergence and new species over time.

Syllabus
First assessment 2025
Topic
A4.1
Level
HL

Learning objectives

A4.1.1Evolution as change in heritable characteristics• Evolution is cumulative change in heritable characteristics of a population• Acquired characteristics are not inherited in the Darwinian senseA4.1.2Evidence from sequences• Universal DNA, genetic code, ATP use, and core metabolism support common ancestry• DNA, RNA, and protein sequence differences indicate relatedness and divergenceA4.1.3Evidence from selective breeding• Selective breeding shows traits can change rapidly under selection• Examples include pigeons, domesticated animals, Brassica crops, wheat, and maizeA4.1.4Evidence from homologous structures• Homologous structures share ancestry even when functions differ• Vertebrate pentadactyl limbs support divergent evolution and adaptive radiationA4.1.5Convergent evolution• Analogous structures have similar functions but different evolutionary origins• Similar selection pressures can produce convergence, such as bat and insect wingsA4.1.6Speciation by splitting of pre-existing species• Speciation forms new species by splitting a pre-existing species• Isolated gene pools diverge through selection, mutation, and genetic driftA4.1.7Reproductive isolation and differential selection• Reproductive isolation reduces gene flow so populations can diverge• Geographic separation and different selection pressures can drive speciation• Chimpanzees and bonobos illustrate river-linked isolation and divergenceA4.1.8(HL)—Sympatric vs. allopatric speciation• Allopatric speciation involves geographic isolation• Sympatric speciation occurs without spatial separation• Temporal, behavioural, or intrinsic isolation can separate sympatric populationsA4.1.9(HL)—Adaptive radiation• Adaptive radiation produces many related species from one ancestor• Divergence into different niches reduces competition• Darwin's finches illustrate beak adaptation to different feeding nichesA4.1.10(HL)—Barriers to hybridization• Prezygotic barriers include habitat, temporal, and behavioural isolation• Postzygotic barriers include inviable or infertile hybrids, such as mulesA4.1.11(HL)—Abrupt speciation in plants• Polyploidy can cause abrupt reproductive isolation in plants• Autopolyploidy and allopolyploidy can create fertile new lineages• Hybridization in Persicaria illustrates plant speciation by chromosome change

Evolution changes populations across generations

Evolution is the cumulative change in the heritable characteristics of a population across generations. The population evolves when inherited variants change in frequency; an individual does not evolve during its lifetime.

Change Inherited by offspring? Evolutionary meaning
A DNA variant in a reproductive lineage potentially can enter the population gene pool
A stable heritable change in gene regulation sometimes can contribute while it remains transmissible
Larger muscles from training or a stretched body part no an acquired phenotype, not Darwinian evolution

Mutation and recombination generate heritable variation. Selection, genetic drift and gene flow alter which variants are passed on, so the distribution of characteristics in the next generations can differ from the starting population.

Molecular unity and difference reveal evolutionary history

Nearly all cellular life stores heredity in DNA, uses an almost universal genetic code, translates RNA on ribosomes, transfers energy with ATP and shares core metabolic chemistry. This deep unity is evidence of common ancestry.

Observation in homologous sequences Supported inference
many conserved positions inheritance from a shared ancestor
fewer sequence differences between two taxa usually a more recent common ancestor
differences accumulated after a split evidence of divergence, interpreted with the gene and model used
Aligned homologous molecular sequences show conserved positions and substitutions that support a branching evolutionary relationship.

Sequence similarity is evidence, not a complete history by itself. The sequences must be homologous, sampling must be adequate, and different genes or evolutionary models can yield different estimates.

Selective breeding exposes the power of inherited variation

Selective breeding produces visibly different crop forms from a shared wild ancestor by repeatedly choosing heritable variants.
1

A breeding population already contains heritable variation produced by mutation and recombination. The breeder does not create the desired allele by wanting it.

2

Individuals with a desired phenotype are chosen as parents, so alleles contributing to that phenotype are overrepresented among their offspring.

3

Repeating the choice over generations shifts the population mean and can produce striking breeds or crop forms, as in pigeons, Brassica vegetables and maize.

Artificial and natural selection act on inherited variation, but the selecting agent differs: human preference in breeding, and differential survival or reproduction in the environment.

Homology records divergence; analogy records convergence

Pattern Origin Evolutionary process Example
Homologous structures one ancestral structure, modified for different functions divergent evolution pentadactyl forelimbs for grasping, flight, running or swimming
Analogous structures independent structures shaped by similar selection convergent evolution bat and insect wings as flight surfaces
Homologous vertebrate forelimbs retain one ancestral bone plan despite different functions; bat and insect wings have similar functions but different structural origins.

Similarity of function does not establish close ancestry. Classify evolutionary relationships using homologous features and independent molecular evidence; use analogous features to explain how similar niches can produce similar solutions.

Speciation begins when gene flow no longer unifies a population

A once-connected population experiences reduced gene flow, after which separated gene pools diverge into distinct lineages.
1

One ancestral species begins as populations exchanging alleles through reproduction; gene flow tends to keep their gene pools similar.

2

A geographic, ecological, temporal, behavioural or chromosome barrier reduces allele exchange, so the populations no longer evolve as one fully connected gene pool.

3

Mutation, genetic drift and different selection pressures alter allele frequencies independently on each side of the barrier.

4

If reproductive isolation becomes strong enough that the lineages no longer exchange genes and produce fertile offspring, one pre-existing species has split into two or more species.

Isolation changes which variants succeed in each gene pool

1

Chimpanzees occur mainly north of the Congo River and bonobos south of it. A founder population crossing during a lower-water period, followed by renewed river isolation, is one evidence-based explanation for their divergence from a common ancestor.

2

The river restricts movement and mating, so alleles are not continually mixed between the populations. Isolation creates the conditions for divergence; it does not directly specify which traits will evolve.

3

Different environments and social or ecological interactions can favour different heritable variants, while mutation and genetic drift also change each gene pool independently. Over many generations these processes can establish reproductive isolation.

A present-day barrier and a modern distribution support a historical hypothesis but do not by themselves date the split. Fossil, geological and molecular evidence are needed to test when and how isolation occurred.

Summary: match evolutionary evidence to the claim

Evidence What it supports What it does not show alone
molecular universals deep common ancestry the exact branching history
homologous-sequence differences relative relatedness and divergence a conclusion independent of gene choice or model
selective breeding populations respond rapidly to selection on heritable variation that humans direct natural evolution
homologous structures descent with modification identical function
analogous structures convergence under similar selection recent common ancestry

Evolution can change one connected population without creating a new species. Speciation specifically requires a pre-existing species to split: gene flow falls, gene pools diverge independently, and reproductive isolation prevents renewed allele mixing.

Keep the scale explicit: individuals carry variants and reproduce; populations evolve; lineages split into species.

Allopatric and sympatric speciation differ in how isolation begins

HL only
Dimension Allopatric speciation Sympatric speciation
Spatial relation populations separated geographically populations remain in the same area
Initial barrier river, mountain, island colonization or other physical separation temporal, behavioural, ecological or chromosome-based isolation
Shared mechanism reduced gene flow allows independent selection, mutation and drift reduced gene flow allows independent selection, mutation and drift
Test show that the spatial barrier plausibly restricted allele exchange show that mating or fertilization is restricted despite overlap

Geography is not the definition of reproductive isolation. Some gene flow can persist if divergent selection is strong enough to overcome its homogenizing effect, and intrinsic barriers may evolve after an earlier period of geographic separation.

Adaptive radiation turns ecological opportunity into related species

HL only
1

An ancestral population reaches an environment containing several underused ecological niches, such as different food sources or habitats.

2

Heritable variants that improve performance in different niches leave more offspring in those niches, so populations diverge in traits such as beak form.

3

Reduced gene flow and reproductive isolation turn the diverging populations into several related species. Niche differences reduce direct competition and allow the species to coexist.

Adaptive radiation is therefore rapid diversification from one ancestor into multiple species adapted to different ecological roles; it is not simply variation within one population.

Prezygotic barriers stop allele transfer before a zygote forms

HL only
Barrier How allele mixing is prevented Example
habitat or temporal isolation potential mates do not encounter one another in the right place or season spring- and autumn-spawning populations
behavioural isolation courtship signal and preference do not match divergent bird displays
mechanical or gametic isolation mating or gamete recognition fails incompatible structures or gametes

Prezygotic barriers prevent mating or fertilization. They avoid the cost of producing low-fitness hybrids and can therefore be strengthened by selection where related populations meet, a process called reinforcement.

Postzygotic barriers reduce hybrid survival or fertility

HL only
Barrier How allele mixing is prevented Example
hybrid inviability offspring fails to develop or survive incompatible developmental gene interactions
hybrid sterility hybrid survives but cannot form balanced gametes mule

Species boundaries can be partly permeable. Occasional hybrids do not prove that two gene pools are fully connected: measure how often hybrids form, whether they survive and reproduce, and how much gene flow actually occurs.

Autopolyploidy can isolate a plant in one generation

HL only
1

A meiotic spindle failure can produce an unreduced 2n gamete instead of a haploid n gamete.

2

Fusion of two 2n gametes, or genome doubling in a diploid individual, produces a 4n autopolyploid containing extra chromosome sets from the same species.

3

A 4n plant crossed with a 2n ancestor produces 3n offspring. Three homologues cannot divide into balanced pairs during meiosis, so the triploid is usually infertile.

4

Two compatible 4n plants can pair homologues and produce fertile offspring with one another. The chromosome-number barrier can therefore establish a reproductively isolated lineage abruptly.

Allopolyploidy restores pairing after hybridization

HL only
1

Gametes from two related species, carrying chromosome sets A and B, can fuse to form an AB hybrid. Each chromosome lacks a fully homologous partner, so meiosis is unbalanced and the hybrid is usually sterile.

2

Whole-genome doubling produces AABB. Every chromosome now has a homologous partner, allowing balanced pairing and potentially fertile gametes.

3

The fertile allopolyploid can reproduce with others carrying AABB but not successfully with either original diploid parent, creating a new reproductively isolated lineage.

The plant genus Persicaria contains multiple allopolyploid species; widespread P. lapathifolia has contributed to several hybrid lineages. The named case illustrates the mechanism—it does not imply that every hybrid automatically becomes a species.

HL Summary: identify what stops alleles mixing

HL only
Route First reduction in gene flow How distinct lineages become established
allopatric physical separation independent selection, mutation and drift; later reproductive barriers
sympatric temporal, behavioural, ecological or chromosome barrier in one area assortative mating or gamete and ploidy barriers
adaptive radiation repeated ecological separation among niches divergent selection plus reproductive isolation produces several related species
polyploid plant speciation chromosome-set mismatch with diploid ancestors compatible polyploids pair chromosomes and reproduce with one another

Prezygotic barriers prevent mating or fertilization; postzygotic barriers reduce hybrid survival or fertility. Both matter because they reduce the movement of alleles between gene pools.

Speciation is complete lineage splitting, not simply visible difference. Ask what reduced gene flow, what made the gene pools diverge, and what now maintains reproductive isolation.

Evolution as change in heritable characteristics

8 marks

Explain how the process of evolution occurs.

Evidence from sequences

6 marks

Discuss how variations in proteins can indicate phylogeny and be used as an evolutionary clock.

Evidence from selective breeding

3 marks

Outline the evidence for evolution provided by selective breeding.

Evidence from homologous structures

4 marks

Describe the evidence for evolution from homologous structures.

Convergent evolution

4 marks

Explain how analogous structures can evolve.

Speciation by splitting of pre-existing species

5 marks

Describe the changes that occur in gene pools during speciation.

Reproductive isolation and differential selection

7 marks

Explain how isolation leads to speciation.

Sympatric vs. allopatric speciation

HL only

3 marks

Compare allopatric speciation and sympatric speciation using the table below.

AllopatricSympatric

Adaptive radiation

HL only

5 marks

The human hand is an example of adaptive radiation. Outline adaptive radiation.

Abrupt speciation in plants

HL only

7 marks

Research suggests that many living plant species are polyploid. Explain how polyploidy occurs and, using a named example, how polyploidy can lead to speciation.