A2.2 Cell structure

Cell structure connects microscopy, universal cellular organization, prokaryotic and eukaryotic diversity, specialized exceptions, differentiation, and evolutionary explanations for complex cells and multicellularity.

Syllabus
First assessment 2025
Topic
A2.2
Level
SL

Learning objectives

A2.2.1Cells as basic structural unit• Cells are the basic structural and functional units of living organisms• Cells carry out essential life processes and are usually microscopicA2.2.2Microscopy skills• Use light microscopes to prepare mounts, stain specimens, and observe cells• Measure cells with eyepiece graticules and stage micrometers• Calculate magnification, actual size, and scale barsA2.2.3Developments in microscopy• Resolution, not only magnification, determines visible detail• TEM reveals internal ultrastructure; SEM reveals surface detail• Cryogenic EM, fluorescence, and immunofluorescence reveal molecules and specific structuresA2.2.4Structures common to all cells• All cells have a plasma membrane, cytoplasm, DNA, and ribosomes• These structures control exchange, support metabolism, store information, and make proteinsA2.2.5Prokaryote cell structure• Prokaryotes lack a nucleus and membrane-bound organelles• Structure includes cell wall, plasma membrane, cytoplasm, 70S ribosomes, naked circular DNA, and plasmids• E. coli, Bacillus, and Staphylococcus are bacterial examplesA2.2.6Eukaryote cell structure• Eukaryotes have a nucleus, 80S ribosomes, cytoskeleton, and compartmentalized cytoplasm• Organelles include mitochondria, ER, Golgi apparatus, vesicles, lysosomes, and vacuoles• Plant cells may include chloroplasts, large vacuoles, and cellulose cell wallsA2.2.7Processes of life in unicellular organisms• Unicellular organisms carry out all life processes in one cell• Examples include Amoeba, Chlamydomonas, and Escherichia coli• Processes include nutrition, metabolism, response, excretion, homeostasis, growth, and reproductionA2.2.8Differences in eukaryotic cells• Animal, fungal, and plant cells differ in cell walls, vacuoles, and storage structures• Plant cells have cellulose walls, chloroplasts, and large permanent vacuoles• Animal cells may have centrioles, cilia, flagella, lysosomes, and temporary vacuolesA2.2.9Atypical cell structure• Atypical cells show limits of simple cell theory• Examples include multinucleate fungal hyphae and striated muscle fibres• Red blood cells and phloem sieve tubes lack nuclei at maturityA2.2.10Cell identification in micrographs• Identify prokaryotic, plant, and animal cells in light and electron micrographs• Recognize organelles such as nucleus, mitochondria, chloroplasts, ER, Golgi, vacuoles, and ribosomes• Use visible structures, scale, and tissue context as evidenceA2.2.11Drawing and annotation• Draw clear biological diagrams from electron micrographs without shading• Label visible organelles and include magnification or scale information• Annotate structures with functions where required

A cell is an integrated living unit

A cell is the smallest membrane-bounded unit that can carry out the processes of life. A tissue is different: it is a group of cells cooperating in a shared function.

Cell theory states that:

  • living organisms consist of one or more cells
  • cells are the basic units of structure and function
  • new cells arise from pre-existing cells

The theory is a powerful biological model, not a claim that every cell has the same appearance. Later examples such as multinucleate fibres and mature cells without nuclei test its boundaries without removing the central idea that living organization is cellular.

Prepare and focus a specimen without losing it

1

Make a thin temporary mount, add a coverslip, and use an appropriate stain when transparent structures need contrast.

2

Start with the low-power objective. Centre the specimen while the field of view is wide.

3

Bring the image into focus with coarse adjustment, then sharpen it with fine adjustment while moving the stage away from the objective.

4

Rotate to a higher-power objective only after centring. Use fine focus only because the working distance is now small.

5

Record the specimen, stain, objective and any measurement. Preparation and staining may alter appearance, so observed features must be interpreted as evidence rather than treated as untouched reality.

Calibrate before converting divisions into micrometres

A stage micrometer calibrates an eyepiece graticule, which is then used to measure a cell and convert divisions into micrometres.

M=IAA=IMI=A×MM = \frac{I}{A} \qquad A = \frac{I}{M} \qquad I = A \times M

At one objective, 10 graticule divisions correspond to 20 µm, so each division represents 2 µm. A cell spanning 18 divisions is therefore 36 µm long. If its printed image is 54 mm long, convert 54 mm to 54,000 µm before calculating: M=54,000/36=1,500×M = 54{,}000/36 = 1{,}500\times.

Calibration belongs to a particular objective lens. Changing the objective changes the real distance represented by one graticule division, so the calibration must be repeated.

Choose the microscope for the evidence you need

Magnification makes an image larger; resolution allows two close points to be seen as separate. Enlarging beyond the resolution limit only produces a larger blur.

Evidence needed Useful method Important limit
living cells and larger structures compound light microscopy about 0.2 µm resolution
location of a named molecule fluorescence or immunofluorescence the dye or antibody identifies only its target
internal ultrastructure in a thin section TEM specimen is fixed, stained and viewed in vacuum
surface form SEM shows surface, not a thin internal section
near-native molecular structure cryo-EM frozen samples and computational reconstruction are required

Preparation can introduce artefacts. Confidence increases when different preparation methods reveal a consistent structure, rather than when one impressive image is accepted alone.

Four components make every cell a workable system

All cells contain:

  • a plasma membrane that controls exchange with the surroundings
  • cytoplasm in which metabolic reactions occur
  • DNA that stores inherited information
  • ribosomes that translate information into polypeptides
A generic cell shows the four universal components: plasma membrane, cytoplasm, DNA and ribosomes.

None of these components alone is a cell. Together they create a bounded chemical system that can maintain itself, use information and make the proteins needed for its activities.

A prokaryote concentrates life in one small compartment

A prokaryotic cell has no nucleus and no membrane-bound organelles. Its single circular, naked chromosome occupies a nucleoid region in the cytoplasm, where 70S ribosomes make proteins. In eubacteria, a peptidoglycan wall lies outside the plasma membrane.

A generalized bacterium distinguishes always-present cell wall, membrane, cytoplasm, circular chromosome and 70S ribosomes from variable plasmids, capsule, pili and flagellum.

Plasmids, capsules, pili, flagella and specialized membrane regions occur in some bacteria, not all. E. coli, Bacillus and Staphylococcus also differ in shape and wall organization, so no optional feature should be treated as the definition of a prokaryote.

Eukaryotic compartments divide and connect cellular work

A eukaryotic cell encloses linear chromosomes in a nucleus and uses membrane-bound organelles to maintain different reaction conditions. Mitochondria transfer energy to ATP; the ER, Golgi apparatus, vesicles and lysosomes form a connected system for synthesis, transport, modification and digestion.

A eukaryotic cell diagram labels the nucleus, rough endoplasmic reticulum, Golgi apparatus, lysosome and mitochondrion as connected functional compartments.

For a secreted protein, information and material move through a coordinated route: nuclear gene → transcription → rough-ER ribosome → ER lumen → transport vesicle → Golgi modification and sorting → secretory vesicle → plasma membrane.

The cytoskeleton gives internal organization and shape. Microtubules guide vesicles and move chromosomes; actin microfilaments resist tension and contribute to cell movement and shape change.

One cell must complete every life process

A unicellular organism cannot delegate essential work to tissues. Nutrition, metabolism, homeostasis, excretion, response, movement, growth and reproduction must all be achieved within one cell.

Life process Amoeba or Paramecium Chlamydomonas E. coli
nutrition engulfs particles into food vacuoles photosynthesizes and absorbs ions absorbs small molecules
water balance contractile vacuoles expel excess water membrane transport and vacuoles regulate contents membrane transport maintains cytoplasm
movement or response pseudopodia or cilia respond to local conditions flagella and light-sensitive responses receptors and flagella in motile strains
reproduction cell division cell division binary fission

The structures differ, but the same functional problem remains: matter, information and energy must be coordinated inside one bounded cell.

Plant, fungal and animal cells modify a shared eukaryotic plan

Feature Plant cell Fungal cell Animal cell
wall cellulose chitin absent
plastids chloroplasts in photosynthetic cells absent absent
vacuoles often one large permanent vacuole vacuoles present usually small and temporary
carbohydrate store starch glycogen glycogen
frequent additional structures plasmodesmata branching hyphae in many species centrioles; cilia or flagella in some cells
Side-by-side animal, plant and fungal cells show that plants and fungi have walls, while only the plant cell has chloroplasts.

Classification should use a combination of structures. A wall alone does not prove that a cell is plant, and the absence of a chloroplast does not exclude plant tissue because many plant cells are non-photosynthetic.

Atypical cells expose where the simple model breaks

  • Aseptate fungal hyphae have many nuclei in continuous cytoplasm without complete cross-walls.
  • Striated muscle fibres form by cell fusion and remain long and multinucleate.
  • Mature red blood cells lose the nucleus and most organelles, gaining space and flexibility for oxygen transport but losing the ability to divide.
  • Sieve-tube elements lose the nucleus and depend metabolically on adjacent companion cells.
A multinucleate skeletal muscle fibre, an aseptate fungal hypha with continuous cytoplasm, and a giant unicellular alga illustrate different departures from a small one-nucleus cell.

These cases do not show that cell theory is useless. They show that specialization can redistribute cellular functions across shared cytoplasm or cooperating cells, so “one small compartment with one nucleus” is not the theory itself.

Identify a micrograph by converging clues

Build an identification from several clues:

  • establish the imaging method and scale
  • locate boundaries and decide whether they are walls or membranes
  • look for an internal pattern, not just a familiar outline
  • use tissue context and neighbouring structures
  • state the observation before naming the structure

Here, several parallel flattened sacs plus small vesicles at their margins support Golgi apparatus. One circular membrane profile would be weak evidence because a section can cut many organelles into circles.

A labelled Golgi diagram is paired with an electron micrograph showing stacked flattened cisternae and nearby vesicles.

Absence is weaker than presence: a thin section may miss an organelle that exists elsewhere in the cell. Identification should therefore rest on visible positive evidence whenever possible.

Translate a micrograph into an evidence-based drawing

1

Trace the main boundaries and proportions from the micrograph before naming anything.

2

Use a large drawing with single clear continuous lines. Do not shade, colour or invent structures that are not visible.

3

Add ruled, non-crossing label lines that touch the named feature. A label identifies; an annotation adds a justified structure–function statement.

4

Include magnification or a calculated scale bar, with image and actual lengths converted to the same units.

Before adding an annotation, ask whether the feature can be pointed to in the drawing and whether the claimed function follows from that observed structure. Biological knowledge may guide interpretation, but it must not fabricate visual evidence.

SL synthesis: build a cell claim from evidence

Question Evidence to use Claim it can support
Is this a cell? membrane-bounded cytoplasm with genetic material and ribosomes an integrated cellular unit
How large is it? calibrated graticule, scale bar or magnification with consistent units an actual dimension
What kind of cell is it? scale, nucleus or nucleoid, organelles, wall material and context prokaryotic or a eukaryotic lineage
What does a structure do? visible geometry connected to a known mechanism a defensible structure–function inference

A strong conclusion keeps observation → interpretation → limitation in that order. One clue may suggest an identity; several independent clues make it defensible.

Cells as basic structural unit

2 marks

Outline the cell theory.

Microscopy skills

3 marks

Outline the procedure for focusing a light microscope.

Developments in microscopy

1 mark

What is a feature of immunofluorescence in light microscopy?

Structures common to all cells

2 marks

List two structures that neurons have in common with prokaryotic cells.

Prokaryote cell structure

9 marks

Escherichia coli is a unicellular organism, so each cell must carry out all of the processes required for life. Outline the functions of each of the structures in the cells of Escherichia coli.

Eukaryote cell structure

2 marks

Label structures I, II, III and IV.
I.
II.
III.
IV.

Processes of life in unicellular organisms

4 marks

Unicellular and multicellular organisms share the same functions of life. Outline four functions of life.

Differences in eukaryotic cells

3 marks

Distinguish between structures in animal and plant cells.

Atypical cell structure

7 marks

Discuss the cell theory and its limitations.

Cell identification in micrographs

3 marks

Identify organelles I to III.

I:
II:
III:

Drawing and annotation

3 marks

Draw a labelled diagram of a nucleus from a eukaryotic cell, such as an onion epidermis cell, as seen using an electron microscope.