Topic 19: Organic Nitrogen Compounds: Amines, Amides, Amino Acids and Proteins

Syllabus
2017
Topic
Level
A2

Learning objectives

19.1The nomenclature of amides, amines and amino acidsUnderstand the nomenclature of amides, amines and amino acids and be able to draw their structural, displayed and skeletal formulae19.2The reactions of primary aliphatic amines (using butylamine as an example) and aromatic amines (using phenylamine asUnderstand the reactions of primary aliphatic amines (using butylamine as an example) and aromatic amines (using phenylamine as an example) with: i water to form an alkaline solution ii acids to form salts iii halogenoalkanes iv ethanoyl chloride v copper(II) ions to form a complex ion19.3Amines are miscible with water as a result of hydrogen bonding, and the reasons for the difference in basicity betweenUnderstand that amines are miscible with water as a result of hydrogen bonding, and the reasons for the difference in basicity between ammonia, primary aliphatic amines and primary aromatic amines19.4Understand, in terms of reagents and general reaction conditions, the preparation of primary aliphatic amines: iUnderstand, in terms of reagents and general reaction conditions, the preparation of primary aliphatic amines: i from halogenoalkanes ii by the reduction of nitriles19.5The preparation of aromatic amines by the reduction of aromatic nitro- compounds using tin and concentrated hydrochloricKnow the preparation of aromatic amines by the reduction of aromatic nitro- compounds using tin and concentrated hydrochloric acid19.6The reaction of aromatic amines with nitrous acid to form benzenediazonium ions, followed by a coupling reaction with phenolBe able to describe the reaction of aromatic amines with nitrous acid to form benzenediazonium ions, followed by a coupling reaction with phenol to form a dye19.7Amides can be prepared from acyl chloridesUnderstand that amides can be prepared from acyl chlorides19.8Describe: i condensation polymerisation for the formation of polyamides such as nylon and proteins ii additionBe able to describe: i condensation polymerisation for the formation of polyamides such as nylon and proteins ii addition polymerisation, including poly(propenamide) and poly(ethenol)19.9Draw the structural formulae of the repeat units of the polymers in 19.8Be able to draw the structural formulae of the repeat units of the polymers in 19.819.10Comment on the physical properties of polyamides and the solubility in water of the addition polymer poly(ethenol) in termsBe able to comment on the physical properties of polyamides and the solubility in water of the addition polymer poly(ethenol) in terms of hydrogen bonding, including soluble laundry bags or liquid-detergent capsules (liquitabs)19.11Experiments to investigate the characteristic behaviour of amino acids limited to: i acidity and basicity and the formationBe able to describe experiments to investigate the characteristic behaviour of amino acids limited to: i acidity and basicity and the formation of zwitterions ii effect of aqueous solutions on plane-polarised monochromatic light iii formation of peptide bonds by condensation polymerisation19.12CORE PRACTICAL 15 Analysis of some inorganic and organic unknownsCORE PRACTICAL 15 Analysis of some inorganic and organic unknowns.

Name and draw amines, amides and amino acids

Family Naming move Example
amine choose the longest chain bonded to N; use -amine and number its position CHX3CH(NHX2)CHX3\ce{CH3CH(NH2)CH3} is propan-2-amine
substituted amine name carbon groups on N with N- locants CHX3NHCHX2CHX3\ce{CH3NHCH2CH3} is N-methylethanamine
amide carbonyl carbon is C1; replace -oic acid by -amide CHX3CHX2CONHX2\ce{CH3CH2CONH2} is propanamide
amino acid carboxylic acid supplies the parent and C1; amino is a numbered prefix CHX3CH(NHX2)COOH\ce{CH3CH(NH2)COOH} is 2-aminopropanoic acid

For a structural formula, show the atom connectivity in groups; for a displayed formula, show every bond; for a skeletal formula, omit carbon labels and carbon-bound H atoms but show N, O and their attached H atoms. Classify an amine as primary, secondary or tertiary by the number of carbon groups bonded directly to nitrogen.

Do not classify an amine by the total number of carbon atoms. In an amide the nitrogen is bonded to a carbonyl carbon, CONHX2\ce{-CONH2}; NHX2\ce{-NH2} on an alkyl chain is an amine.

The nitrogen lone pair controls the five specified amine reactions

Partner Role of a primary amine RNHX2\ce{RNH2} Product / observation
water proton acceptor RNHX3X++OHX\ce{RNH3+ + OH-}; alkaline solution
acid proton acceptor alkylammonium salt, e.g. RNHX3X+ClX\ce{RNH3+Cl-}
halogenoalkane nucleophile in substitution secondary amine; further substitution can continue
ethanoyl chloride nucleophile in acylation N-substituted ethanamide + HCl
aqueous CuX2+\ce{Cu^{2+}} base, then ligand in excess pale-blue Cu(OH)X2\ce{Cu(OH)2}, then a deep-blue amine complex

\ce{RNH2 + H2O <=> RNH3+ + OH-}

Butylamine represents a primary aliphatic amine and phenylamine a primary aromatic amine. In both, the lone pair can bond to HX+\ce{H+}, attack an electron-poor carbon, or donate to CuX2+\ce{Cu^{2+}}; their different basicities change how readily protonation occurs.

Excess halogenoalkane does not stop at a secondary amine: the product still has a nitrogen lone pair and may form tertiary amine and then quaternary ammonium salt. Use excess amine when the primary-product yield must be favoured.

Hydrogen bonding explains mixing; lone-pair availability explains basicity

A small amine mixes with water because its polar C-N/N-H region can form hydrogen bonds with water. The nitrogen lone pair accepts a hydrogen bond from water, and an N-H bond can donate one. These favourable amine-water attractions replace the attractions disrupted on mixing.

Base Effect on the nitrogen lone pair Relative tendency to accept HX+\ce{H+}
primary aliphatic amine alkyl group releases electron density by the positive inductive effect greater than ammonia
ammonia no alkyl donation and no aromatic delocalisation intermediate
primary aromatic amine lone pair overlaps with the benzene π\pi system and is less localised on N less than ammonia

\ce{RNH2 + H2O <=> RNH3+ + OH-}

Hydrogen bonding explains aqueous miscibility, not the ordering of basic strength. Basicity depends on how available the nitrogen lone pair is to form a dative bond to a proton.

Prepare primary aliphatic amines by substitution or nitrile reduction

Starting material Reagents and conditions Carbon skeleton Key limit
halogenoalkane excess concentrated ethanolic NHX3\ce{NH3}; heat in a sealed tube / under pressure unchanged further alkylation competes, so excess ammonia favours the primary amine
nitrile LiAlHX4\ce{LiAlH4} in dry ether, followed by water/dilute acid nitrile carbon remains and becomes CHX2NHX2\ce{-CH2NH2} gives a primary amine directly

\ce{R-X + 2NH3 -> RNH2 + NH4X}

\ce{R-CN + 4[H] -> R-CH2NH2}

To make butylamine by reduction, begin with butanenitrile: CHX3CHX2CHX2CN\ce{CH3CH2CH2CN} becomes CHX3CHX2CHX2CHX2NHX2\ce{CH3CH2CH2CH2NH2}. Count the nitrile carbon as part of the product chain.

Tin and concentrated hydrochloric acid are the specified reduction system for aromatic nitro compounds, not for nitriles.

Reduce an aromatic nitro group to an aromatic amine

Heat the aromatic nitro compound under reflux with tin and concentrated hydrochloric acid. Six reducing equivalents replace the two nitro oxygens by hydrogen, converting NOX2\ce{-NO2} into NHX2\ce{-NH2}. In the acidic mixture the amine is initially present as an arylammonium salt; adding alkali liberates the free aromatic amine.

\ce{C6H5NO2 + 6[H] -> C6H5NH2 + 2H2O}

Thus nitrobenzene gives phenylamine. Preserve every other substituent on the ring when applying the route to a substituted nitroarene, and show the same carbon skeleton before and after reduction.

LiAlHX4\ce{LiAlH4} is the specified reagent for reducing nitriles in 19.4; Topic 19.5 specifically requires tin and concentrated hydrochloric acid for aromatic nitro compounds.

Diazotisation followed by coupling forms an azo dye

Stage Reagents and conditions Organic change
diazotisation NaNOX2+HCl\ce{NaNO2 + HCl} (nitrous acid made in situ), 0-5 °C in an ice bath phenylamine \rightarrow benzenediazonium ion
coupling add the cold diazonium solution to phenol in alkaline solution electrophilic substitution joins the rings through N=N\ce{-N=N-}

\ce{C6H5NH2 + HNO2 + H+ -> C6H5N2+ + 2H2O}

Alkali converts phenol into the more electron-rich phenoxide ion. Its activated ring couples mainly at the para position when that position is available, giving a conjugated azo compound; extended delocalisation absorbs visible light, so the product is coloured.

Keep the diazotisation mixture cold: benzenediazonium ions are unstable at higher temperature. Nitric acid is not a substitute for nitrous acid, and the azo link is N=N\ce{-N=N-}, not a single N-N bond.

Acyl chlorides form amides by nucleophilic acyl substitution

Ammonia attacks the electron-deficient carbonyl carbon of an acyl chloride; chloride is displaced and an amide forms. A second ammonia molecule neutralises the hydrogen chloride, so excess ammonia is used.

\ce{RCOCl + 2NH3 -> RCONH2 + NH4Cl}

A primary amine reacts by the same acylation pattern to give an N-substituted amide. For example, ethanoyl chloride plus butylamine gives N-butylethanamide; an additional amine molecule accepts the released proton.

\ce{RCOCl + 2R'NH2 -> RCONHR' + R'NH3Cl}

The carbonyl group is retained in the product: the structural change is COClCONHX2\ce{-COCl -> -CONH2} or CONHRX\ce{-CONHR'}. Do not draw an amine product with the carbonyl removed.

Distinguish polyamide condensation from alkene addition

Polymerisation Monomer requirement Bond-forming change Small molecule lost? Examples
condensation to a polyamide two functional groups per monomer: diamine + diacyl compound, or amino acid repeated CONHX\ce{-CO-NH-} links form yes, e.g. HCl\ce{HCl} or HX2O\ce{H2O} nylon; proteins/polypeptides
addition a C=C bond in each monomer π\pi bond opens and C-C backbone links form no poly(propenamide); poly(ethenol)

Each amino acid contains both NHX2\ce{-NH2} and COOH\ce{-COOH}. Condensation between these groups forms a peptide (amide) link and eliminates water; repeating the change produces a polypeptide or protein.

For propenamide, CHX2=CHCONHX2\ce{CH2=CHCONH2} gives a backbone bearing CONHX2\ce{-CONH2} side groups. The poly(ethenol) repeat unit has OH\ce{-OH} side groups on an addition-polymer carbon backbone.

A polyamide is classified by how its chain links form, not merely by containing nitrogen. Addition polymerisation produces no small-molecule by-product.

Draw repeat units by preserving linkages and continuation bonds

Polymer from 19.8 Repeat unit
nylon 6,6 [NH(CHX2)X6NHCO(CHX2)X4COX]n[\ce{-NH-(CH2)6-NH-CO-(CH2)4-CO-}]_n
polypeptide from one α\alpha-amino acid [NHCH(R)COX]n[\ce{-NH-CH(R)-CO-}]_n
poly(propenamide) [CHX2CH(CONHX2)X]n[\ce{-CH2-CH(CONH2)-}]_n
poly(ethenol) [CHX2CH(OH)X]n[\ce{-CH2-CH(OH)-}]_n

For an addition polymer, open the monomer C=C to a C-C single bond, keep every substituent on its original carbon, place the smallest repeating section in brackets, and draw a bond through each bracket edge.

For a polyamide, remove the small-molecule fragments at complementary functional groups and join carbonyl carbon to nitrogen. Choose bracket boundaries so repeating the unit reconstructs the uninterrupted chain.

Do not leave a C=C bond in an addition-polymer backbone, and do not omit either continuation bond. The subscript nn counts repeats; it is not a coefficient inside the repeat unit.

Hydrogen bonding controls polyamide strength and poly(ethenol) solubility

Polymer Hydrogen-bond sites Macroscopic consequence
polyamide N-H donors and C=O acceptors on neighbouring chains strong interchain attractions raise melting temperature and contribute to strength
poly(ethenol) many O-H groups can donate and accept hydrogen bonds with water hydration can separate chains and allow water solubility

A soluble laundry bag or liquid-detergent capsule uses a poly(ethenol)-based film that is strong enough while dry but disperses or dissolves when water penetrates. Water forms hydrogen bonds to the many O-H groups and competes with polymer-polymer attractions.

Polyalkenes of similar molar mass have only London forces between chains, so separating their chains generally needs less energy than overcoming the hydrogen-bond network in a polyamide.

Melting does not require breaking the covalent amide bonds in the backbone. Also, hydrogen bonding permits hydration; actual dissolution rate depends on film composition, thickness and conditions, so not every poly(ethenol) sample dissolves identically.

Three experiments reveal characteristic amino-acid behaviour

Investigation Method and observation Inference
acidity/basicity use fresh portions; add dilute acid to one and dilute alkali to another NHX2\ce{-NH2} accepts HX+\ce{H+} and COOH\ce{-COOH} donates HX+\ce{H+}; the amino acid is amphoteric and commonly exists as +HX3NCHRCOOX\ce{+H3N-CHR-COO-}
optical activity pass plane-polarised monochromatic light through equal-path aqueous samples in a polarimeter enantiomers rotate by equal amounts in opposite directions; glycine and a racemic mixture give no net rotation
peptide formation condense bifunctional amino-acid molecules and identify repeated CONHX\ce{-CO-NH-} links peptide bonds form with elimination of water

\ce{H2N-CH(R)-COOH + H2N-CH(R')-COOH -> H2N-CH(R)-CO-NH-CH(R')-COOH + H2O}

Use the same concentration, path length and wavelength when comparing optical rotations. In acid the cationic form is favoured; in alkali the anionic form is favoured.

A zwitterion has both charges within one molecule but is neutral overall. No optical rotation does not by itself prove achirality: equal amounts of two enantiomers also cancel.

Core Practical 15 identifies unknowns through converging evidence

Stage Purpose
observe and partition record state, colour, solubility and pH; reserve separate small portions
test inorganic possibilities select established cation/anion tests, including flame/precipitation/gas tests where appropriate
test organic possibilities choose discriminating functional-group tests such as bromine water, 2,4-DNPH, Tollens', carbonate or amine reactions
confirm combine compatible chemical observations with available IR/mass evidence and eliminate alternatives

Write a decision sequence before testing. For every branch record the reagent, concentration or heating condition, observation and inference. Use fresh portions so acid, alkali, silver ions or oxidants from one test cannot create a false result in the next; include a blank or known comparison when an observation is subtle.

Work on a microscale, wear eye protection, control heating and volatile reagents, and follow separate disposal routes for heavy-metal, silver, oxidising and organic waste. Unknowns must be treated as hazardous until identified.

One positive colour change or one spectral peak is not a secure identity. A negative result counts only when the reagent was active and the required conditions were used; conclude only when independent evidence converges.