2 Cells

Syllabus
2025
Section
2
Level
—

2.1 Cell Structure and Function

Syllabus
2025
Topic
2.1
Level
—

Cell Structures Work as a Coordinated System

A cell's organelles are a division-of-labor system: each structure creates the conditions for a particular job, and several components cooperate to move materials through the cell. Structure therefore helps explain both function and the effect of a disruption.

Component Structure linked to function Cellular contribution
Ribosome Non-membrane complex of rRNA and protein Reads mRNA sequences to synthesize proteins; its presence in all forms of life reflects common ancestry
Rough ER Membrane network associated with bound ribosomes Compartmentalizes and supports protein synthesis and intracellular transport
Smooth ER Membrane network without bound ribosomes Synthesizes lipids and contributes to detoxification
Golgi complex Series of flattened membrane sacs Folds or chemically modifies cellular products and packages proteins for trafficking
Mitochondrion Smooth outer membrane and highly folded inner membrane create compartments Supports reactions of aerobic cellular respiration and efficient ATP synthesis
Lysosome Membrane-enclosed sac containing hydrolytic enzymes Digests material and contributes to programmed cell death (apoptosis)
Vacuole Membrane-bound storage sac Stores cellular materials; a plant cell's large vacuole stores water and nutrients and maintains turgor pressure
Chloroplast Specialized double-membrane organelle in plants and photosynthetic algae Provides the location for photosynthesis

The endomembrane system includes the nuclear envelope, ER, Golgi complex, lysosomes, vacuoles, transport vesicles, and plasma membrane. For a trafficked protein, a membrane-bound ribosome makes the polypeptide at rough ER; membrane compartments and vesicles move it to the Golgi; the Golgi modifies and packages it; and vesicles deliver it to its cellular destination. This sequence shows why damaging one component can interrupt the output of the whole pathway.

Do not treat every organelle as part of the endomembrane system: ribosomes, mitochondria, and chloroplasts have distinct roles. AP does not require specialized-cell functions of smooth ER or the Golgi's synthesis and packaging of the specific excluded lipids and enzymes.

2.2 Cell Size

Syllabus
2025
Topic
2.2
Level
—

Why Surface Area-to-Volume Ratio Limits Size

Surface area determines how much boundary is available for exchange, while volume represents the living material that needs nutrients, produces wastes, and generates or absorbs heat. The surface area-to-volume ratio therefore measures exchange surface available per unit of internal demand.

\text{SA:V ratio}=\frac{\text{surface area}}{\text{volume}}

For a cube with side length ss, SA=6s2SA=6s^2 and V=s3V=s^3, so SA/V=6/sSA/V=6/s. A 1 μm1\,\mu m cube has SA=6 μm2SA=6\,\mu m^2, V=1 μm3V=1\,\mu m^3, and SA/V=6 μm−1SA/V=6\,\mu m^{-1}. A 2 μm2\,\mu m cube has SA=24 μm2SA=24\,\mu m^2, V=8 μm3V=8\,\mu m^3, and SA/V=3 μm−1SA/V=3\,\mu m^{-1}. Doubling linear size increases total surface area, but halves surface area available per unit volume.

As size increases, volume grows faster than surface area. Cells therefore face greater internal demand but proportionally less plasma membrane for nutrient uptake, waste removal, and chemical exchange. Smaller cells usually exchange materials more efficiently. Membrane folds or projections raise surface area without a matching increase in volume. At organism scale, smaller masses exchange proportionally more heat and typically have a higher metabolic rate per unit body mass than larger organisms.

A larger cell can have more total surface area and still have a lower SA:V ratio. The limitation comes from surface area failing to keep pace with volume, not from surface area decreasing.

2.3 Plasma Membrane

Syllabus
2025
Topic
2.3
Level
—

Membrane Components Match Their Chemical Environment

A phospholipid is amphipathic: its phosphate region is polar and hydrophilic, while its fatty-acid regions are nonpolar and hydrophobic. In water, phospholipids form a bilayer with hydrophilic regions facing the aqueous cytosol and extracellular fluid and hydrophobic regions facing one another inside the membrane.

Protein region Compatible position Why
Hydrophobic / nonpolar surface Against fatty-acid regions inside the bilayer It matches the membrane's nonpolar interior
Hydrophilic / charged or polar surface Exposed to cytosol or another aqueous environment It can interact with water
Hydrophilic region inside a folded protein Shielded within the protein Protein folding can place polar regions away from the lipid interior

This chemical matching stabilizes a continuous membrane boundary while allowing proteins with both hydrophobic and hydrophilic regions to sit within it. The membrane can therefore separate the cell's internal environment from its surroundings without requiring every component to have the same chemistry.

The Membrane Is a Fluid Mosaic

The fluid mosaic model describes the plasma membrane as a phospholipid framework containing proteins, steroids such as cholesterol in vertebrate animals, glycoproteins, and glycolipids. These components form one membrane but are not fixed in a permanent pattern.

Term What it means in the model
Fluid Phospholipids and embedded components can move around the cell surface within the membrane
Mosaic Different kinds of molecules are interspersed through the phospholipid framework

Fluid does not mean that the membrane dissolves or loses its boundary. Mosaic does not mean a rigid, tiled wall; it refers to the varied components distributed through a dynamic membrane.

2.4 Membrane Permeability

Syllabus
2025
Topic
2.4
Level
—

The Membrane Interior Selects What Can Cross

Selective permeability arises because phospholipid hydrocarbon tails create a hydrophobic membrane interior. A substance crosses the bilayer easily only when its size and chemical properties are compatible with that interior; otherwise it needs a membrane protein or crosses only slowly.

Substance class Examples Passage across the membrane
Small, nonpolar molecules N2N_2, O2O_2, CO2CO_2 Pass freely through the lipid bilayer
Small, polar, uncharged molecules H2OH_2O, NH3NH_3 Pass through in small amounts
Ions and large polar molecules Charged or strongly hydrophilic substances The hydrophobic core blocks direct passage; embedded channels or transport proteins provide a route

Because different substances have different access, the plasma membrane can separate the cell's internal environment from the external environment while still allowing regulated exchange. A channel or transporter does not remove the hydrophobic barrier; it creates a specific hydrophilic pathway through it.

Selective does not mean completely impermeable. Small polar molecules can cross in limited amounts, while ions and large polar molecules generally require proteins.

Cell Walls Resist Osmotic Lysis

Bacteria, Archaea, Fungi, and plants have a cell wall outside the plasma membrane. The wall provides a structural boundary, acts as a permeability barrier to some substances, and helps the cell keep its shape.

When water enters a cell in a dilute external environment, the cell contents push outward. A cell wall resists excessive expansion, so the rising internal pressure does not simply stretch the plasma membrane until it ruptures. This mechanical resistance protects against osmotic lysis.

The cell wall is not a replacement for the plasma membrane and is not an absolute seal. It adds support and restricts some substances; the plasma membrane remains the cell's selectively permeable boundary.

2.5 Membrane Transport

Syllabus
2025
Topic
2.5
Level
—

Passive and Active Transport Control Gradients

A selectively permeable membrane allows different solute concentrations to exist on opposite sides, forming a concentration gradient. Cells regulate movement across these gradients to maintain solute balance; because solute distribution influences water movement, this regulation also supports water balance.

Mechanism Direct metabolic-energy input Net movement relative to concentration Effect on a gradient
Passive transport Not required High concentration →\rightarrow low concentration Reduces the concentration difference
Active transport Required Can move low concentration →\rightarrow high concentration Can build or maintain the concentration difference

If a cell must keep an ion more concentrated on one side of its membrane, passive movement alone cannot maintain that unequal distribution: active transport can restore it using energy. If the ion is allowed to move down its gradient, passive transport produces net movement without direct metabolic-energy input.

Active transport is defined by its direct energy requirement, not only by direction. Moving from low to high concentration is an important active-transport case, but the CED states that active transport does this in some cases rather than making it the only possible description.

Vesicles Move Cargo Across the Plasma Membrane

Large molecules, particles, or large amounts of material cannot move through the lipid bilayer as individual small solutes do. Cells use energy to reshape the plasma membrane and move this cargo in membrane-bound vesicles.

Process Direction Membrane action Result
Endocytosis Into the cell Plasma membrane folds inward around external material and pinches off A new small vesicle encloses the cargo inside the cell
Exocytosis Out of the cell An internal vesicle fuses with the plasma membrane The vesicle releases large molecules outside the cell

A phagocytic cell can engulf a pathogen by endocytosis, enclosing the particle in a vesicle. A synaptic vesicle can fuse with the plasma membrane by exocytosis and release its contents from the cell. In both cases, energy supports movement of cargo through membrane remodeling.

Endocytosis and exocytosis do not carry cargo through a protein channel. They move cargo by forming or fusing vesicles with the plasma membrane.

2.6 Facilitated Diffusion

Syllabus
2025
Topic
2.6
Level
—

Facilitated Diffusion Provides a Protein Pathway

Facilitated diffusion is passive transport through a membrane protein. A charged or strongly polar substance is poorly matched to the bilayer's hydrophobic interior, so a channel or transport protein provides a compatible route across the membrane.

Substance property or example Why direct bilayer passage is limited Facilitated route
Charged ions such as Na+Na^+ and K+K^+ Charge is incompatible with the hydrophobic interior Ion channel
Large polar molecules Size and polarity make direct passage unfavorable Specific transport protein
Water in large quantities Direct passage does not provide the required high flow Aquaporin channel

The substance moves down its concentration gradient through the protein, so no direct metabolic-energy input is required. Selective opening or availability of channels changes which ions can cross. Unequal movement of charged ions can separate charge across the membrane, causing the membrane to become polarized.

Using a protein does not automatically make transport active. Facilitated diffusion uses a protein but remains passive because net movement is down the concentration gradient and does not require direct energy input.

2.7 Tonicity and Osmoregulation

Syllabus
2025
Topic
2.7
Level
—

Tonicity Predicts the Direction of Osmosis

Tonicity compares an external solution with a cell's internal environment. Across a membrane permeable to water, osmosis produces net water movement from higher water potential to lower water potential—often described as movement from a hypotonic region toward a hypertonic region.

External environment relative to cell Relative external solute concentration Predicted net water movement
Hypotonic Lower Into the cell
Isotonic Equal No net movement
Hypertonic Higher Out of the cell

\Psi=\Psi_p+\Psi_s

Ψ\Psi is total water potential, Ψp\Psi_p is pressure potential, and Ψs\Psi_s is solute potential. Compare total Ψ\Psi on both sides: water moves toward the side with the lower value. Pressure can therefore affect direction as well as solute concentration.

Hypotonic and hypertonic are relative terms, not fixed properties of a solution. Name what the solution is being compared with before predicting water movement.

Osmoregulation Stabilizes Water and Solute Balance

Osmoregulation maintains water balance by controlling an organism's internal solute composition and water potential. Constant movement across membranes supports growth and homeostasis, but unregulated gain or loss of water would disrupt cell volume and function.

Water moves from lower osmolarity (lower solute concentration) toward higher osmolarity (higher solute concentration), which corresponds to movement from higher water potential toward lower water potential. Osmoregulatory mechanisms alter solute handling, water movement, or both so internal conditions remain within a survivable range.

\Psi_s=-iCRT

For a supplied solution, substitute the ionization constant ii, molar concentration CC in mol L−1mol\,L^{-1}, pressure constant R=0.0831 L bar mol−1 K−1R=0.0831\,L\,bar\,mol^{-1}\,K^{-1}, and temperature TT in kelvin (∘C+273^\circ C+273). The negative result is Ψs\Psi_s in bars; increasing ii, CC, or TT makes solute potential more negative and lowers total water potential if pressure potential is unchanged.

Water does not move toward 'more water.' It moves down a water-potential gradient; solute concentration and pressure both contribute to that gradient.

2.8 Mechanisms of Transport

Syllabus
2025
Topic
2.8
Level
—

Active Transport Builds Electrochemical Gradients

Active transport uses metabolic energy and membrane proteins to move ions or molecules in a direction that passive transport alone would not sustain. Because ions cannot freely cross the hydrophobic bilayer, the transport protein provides both a pathway and a mechanism for energy-coupled movement.

  1. ATP supplies energy to an active-transport protein such as an ATPase.
  2. The protein moves selected ions across the membrane.
  3. Unequal ion concentration and charge develop across the membrane.
  4. This electrochemical gradient helps establish or maintain membrane potential.

An electrochemical gradient combines two influences on an ion: its concentration difference and its attraction or repulsion by charge. The Na⁺/K⁺ pump and ATPase activity help maintain these unequal ion distributions and therefore the membrane potential.

Once an ion gradient exists, movement of that ion down its gradient can be coupled to movement of another substance. For example, local question evidence uses a sodium gradient to drive glucose cotransport. The ATP-powered pump establishes the gradient; the coupled transporter uses the gradient's stored potential.

Do not say that every transport protein directly uses ATP. ATP directly powers active pumps; another transporter may instead use an electrochemical gradient that those pumps previously established.

2.9 Cell Compartmentalization

Syllabus
2025
Topic
2.9
Level
—

Membranes Create Reaction Compartments

A membrane-bound organelle is an internal eukaryotic-cell compartment enclosed by its own membrane. The boundary separates the compartment's contents from the cytosol, so a metabolic process or specific enzyme-controlled reaction can occur in a defined local space.

The nuclear envelope, endoplasmic reticulum, Golgi complex, lysosomes, vacuoles, mitochondria, and chloroplasts are membrane-bound structures. Their membranes divide the cell into regions rather than leaving every molecule and reaction in one shared cytosolic environment.

Compartmentalization therefore describes physical organization: a membrane marks where one internal region ends and another begins, allowing different cellular jobs to be localized to different organelles.

Not every subcellular structure is membrane-bound. Ribosomes, for example, perform a cellular function without enclosing an internal compartment.

Compartmentalization Improves Reaction Efficiency

Internal membranes improve eukaryotic-cell function in two distinct ways: they separate processes that could interfere with one another, and they provide additional surface area where membrane-associated reactions can occur.

Membrane contribution Mechanism Functional consequence
Separate compartments Keeps selected enzymes, substrates, and reactions in different spaces Minimizes competing interactions and allows processes to proceed independently
Greater internal membrane area Provides more locations for membrane-associated reactions Increases the capacity for reactions to occur

Together, these effects turn the cell into a coordinated system of specialized reaction spaces. A disruption that removes a boundary can mix processes that were separated; a reduction in internal membrane area can reduce available reaction sites.

More compartments are not automatically better. The advantage comes from organizing the correct processes and reaction surfaces, not simply from adding membranes.

2.10 Origins of Cell Compartmentalization

Syllabus
2025
Topic
2.10
Level
—

How Cell Compartmentalization Evolved

Compartmentalization organizes different cell functions in distinct regions. Both prokaryotic and eukaryotic cells have specialized internal regions, but they differ in how extensively membranes separate those regions.

Feature Prokaryotic cells Eukaryotic cells
Internal organization Specialized structures and functional regions are present Specialized structures and functional regions are present
Membrane-bound organelles Typically absent Numerous internal membranes enclose organelles
Result Functions can be localized without extensive membrane partitions Cell processes are partitioned into specialized membrane-bound regions

Endosymbiosis explains the origin of mitochondria and chloroplasts. An ancestral host cell engulfed free-living prokaryotic cells; the internalized cells supplied useful functions and, over evolutionary time, became permanent organelles. Their own DNA and ribosomes, replication partly independent of the host cell, and surrounding membranes are consistent with this prokaryotic ancestry.

Prokaryotic cells are not unorganized or empty. They typically lack membrane-bound organelles, but they still contain specialized structures and regions. Endosymbiosis specifically accounts for mitochondria and chloroplasts; it does not mean that every eukaryotic organelle began as an engulfed prokaryote.