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IB Biology HL/Notes/A3.1 Diversity of organisms

IB Biology HLA3.1 Diversity of organismsNotes

Variation Inside Species

Diversity begins inside a species. Individuals of the same species are not identical, and that variation is the raw material for natural selection. Continuous variation, such as height or mass, often comes from many genes plus environmental effects, so values form a range rather than neat categories. Darwin noticed that selection can only act when individuals differ.

Variation occurs between individuals within every species.
Continuous variation often results from polygenes and environmental effects.
Darwin used variation to explain how natural selection can favour some individuals over others.
The exam link is variation -> differential survival/reproduction -> natural selection.

Notice that a species stays one species even when individuals vary.

Match each variation idea to its exam role.

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Reasons
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Match each variation idea to its exam role.

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Use Morphology And Binomial Names

Practice

Morphology is useful when biologists group organisms by visible structural traits. It works well in fieldwork, fossils, and many plants, where breeding evidence may be unavailable. But morphology can mislead when males and females look different or when there is large variation inside one species. Binomial nomenclature solves a different problem: it gives every species a universal two-part Latin name, with the genus capitalized and the species lowercase, both italicized or underlined.

Morphological species concept groups organisms by shared morphology and structural traits.
It is useful in fieldwork, fossils, and many plants.
Limits include sexual dimorphism and within-species variation.
Binomial names use Genus species: genus capitalized, species lowercase, both italicized or underlined.
Species in the same genus share similar traits.

Keep species grouping by shared traits separate from the formatting rules of binomial names.

Sort each statement into morphology, naming rule, or morphology trap.

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Unsorted
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morphology evidence
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naming rule
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common trap
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Sort each statement into morphology, naming rule, or morphology trap.

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shared leaf shape
genus capitalized
male and female look different
species lowercase
fossil identified by skeletal structure
wide variation within one species

Test The Species Boundary

The biological species concept tests species by reproduction: members of the same species can interbreed and produce fertile offspring, so gene flow links them. This works well for many sexually reproducing organisms, but it fails or becomes awkward for extinct organisms, asexual organisms, and cases where different forms still exchange genes. Speciation is gradual, so isolated populations may be partly diverged and theoretically able to interbreed, even if they cannot meet. That is why some species boundaries are partly arbitrary.

Biological species concept = interbreeding and fertile offspring.
Gene flow is expected within a biological species.
Limits include extinct organisms, asexual species, and gene flow between distinct forms.
Speciation is gradual as isolated populations diverge.
Some species boundaries are partly arbitrary because biology changes continuously.

Repair this weak answer: “Two organisms are the same species if they look similar.”

Spot Errors

Read Chromosomes As Evidence

Chromosomes give another kind of species evidence. Chromosome number is usually constant within a species but varies between species; diploid numbers are even because chromosomes occur in homologous pairs. A karyotype is the full chromosome set, while a karyogram is the arranged display by length, banding pattern, and centromere position. Human chromosome 2 is important because its structure supports fusion from two ancestral ape chromosomes.

Chromosome number is usually constant within a species but varies between species.
Diploid chromosome numbers are even because chromosomes occur in homologous pairs.
Examples: fruit fly 8, rice 24, human 46, chimpanzee 48, dog 78.
Karyograms arrange chromosomes by length, banding pattern, and centromere position.
Human chromosome 2 supports a fusion hypothesis from two ancestral ape chromosomes.

Use the visual to move from simple counts to structural evidence.

Label the karyogram features that allow comparison.

Label
Labels
4

Label the karyogram features that allow comparison.

Choose
1. length
2. banding pattern
3. centromere position
4. chromosome 2 fusion evidence

Compare Genomes Within And Between Species

A genome is all the genetic information in an organism. Members of one species share most of their genome but differ at variants. SNPs, or single nucleotide polymorphisms, are common single-base differences used as biological markers. Across eukaryotes, genomes vary in size and base sequence, and variation between species is much larger than variation within one species. Also, not all DNA codes for proteins, so genome comparison is not just gene counting.

Genome = all genetic information in an organism.
Members of a species share most of their genome but differ at variants.
SNPs are single-base differences used as biological markers.
Between-species genome variation is much larger than within-species variation.
Not all DNA codes for proteins.

Match each genome term to its meaning.

Match

Use Genome Size And Sequencing Carefully

Practice

Genome size means the amount of DNA in one chromosome set. A larger genome does not necessarily mean a more complex organism; polyploidy can greatly increase genome size, especially in plants. Whole genome sequencing began at scale with the Human Genome Project and is now used for evolutionary relationships, gene discovery, and pathogen research. Future and growing uses include personalized medicine, diagnosis, disease prevention, and vaccine targets.

Genome size is the DNA amount in one chromosome set.
Larger genome size does not necessarily mean greater organism complexity.
Polyploidy can greatly increase genome size, especially in plants.
Whole genome sequencing began at scale with the Human Genome Project.
Sequencing is used for evolutionary relationships, gene discovery, pathogen research, medicine, diagnosis, prevention, and vaccine targets.

Separate the question of DNA amount from the question of what whole genome sequencing can reveal.

Which statement is the safest exam answer?

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Which statement is the safest exam answer?

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SL Transfer: Classify With Evidence

Exam Practice

For SL, A3.1 is really one evidence map. Variation explains why individuals differ. Morphology and binomial nomenclature help group and name organisms. The biological species concept uses interbreeding and fertile offspring, but boundaries can be difficult during gradual speciation. Chromosomes and karyograms add cellular evidence. Genomes, SNPs, genome size, and whole genome sequencing add molecular evidence. The skill is choosing the right evidence for the question.

Variation supports natural selection.
Morphology groups by structure; binomial nomenclature names species universally.
Biological species concept uses interbreeding and fertile offspring.
Karyograms compare chromosome number and structure.
Genome evidence includes SNPs, between-species differences, genome size, and sequencing uses.

Match each exam stem to the evidence tool.

Match

Use this for combined SL questions about classification evidence, species concepts, chromosomes, or genomes.

Variation within species is the basis for natural selection.
Morphology is useful for fieldwork/fossils/plants but can be misled by dimorphism or within-species variation.
Binomial nomenclature uses italicized Genus species with genus capitalized and species lowercase.
Biological species concept uses interbreeding and fertile offspring, but has limits and fuzzy boundaries during speciation.
Chromosome number/karyograms and genome/SNP/sequencing evidence provide additional classification evidence.

Use this for combined SL questions about classification evidence, species concepts, chromosomes, or genomes.

A strong A3.1 answer chooses the right evidence. Morphology can group organisms by structural traits and is useful for fossils or fieldwork, but sexual dimorphism and within-species variation can mislead. Binomial nomenclature gives a universal Genus species name. The biological species concept uses interbreeding and fertile offspring, but fails for fossils, asexual organisms, and some gradual speciation cases. Chromosome number, karyograms, genomes, SNPs, genome size, and whole genome sequencing add cellular and molecular evidence for diversity and classification.

Writing one long list without matching evidence to the question.

HL: Repair Asexual Species Boundaries

HL adds an important warning: the biological species concept does not work well for asexual organisms. Bacteria do not interbreed in the animal sense, but they still gain diversity by mutation and horizontal gene transfer. Transformation, plasmids, and recombination can move genes across lineages, blurring bacterial species boundaries. In many sexually reproducing organisms, haploid and diploid chromosome numbers are usually constant within a species because meiosis conserves chromosome number; different chromosome numbers can prevent fertile hybrids, as in mules.

Biological species concept does not apply well to asexual organisms.
Bacteria gain diversity by mutation and horizontal gene transfer.
Transformation, plasmids, and recombination blur bacterial species boundaries.
Diploid and haploid chromosome numbers are usually constant within a species.
Meiosis conserves chromosome number; mismatched numbers can prevent fertile hybrids, as in mules.

HL species boundaries are clearer when you contrast asexual gene transfer with chromosome-based hybrid limits.

Fix the HL mistake.

Spot Errors

Fix the HL mistake.

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HL: Choose An Identification Tool

Practice

Identification tools depend on the evidence available. A dichotomous key uses paired yes/no choices based on observable features, usually built from a character matrix. DNA barcoding uses short selected gene sequences to identify species by comparison with databases. Environmental DNA can be collected from habitats, amplified by PCR, and matched to databases. Use keys when visible traits are reliable; use barcoding or eDNA when specimens are damaged, partial, hard to identify, or not directly seen. Local plant or animal species can be used to build and test dichotomous keys because their observable traits can be arranged into paired choices.

Dichotomous keys identify organisms through paired yes/no choices.
Keys are built from observable features arranged in a character matrix.
DNA barcoding identifies species using short sequences from selected genes.
eDNA from habitats can be amplified by PCR and compared with databases.
Barcoding is rapid and useful for damaged, partial, or hard-to-identify specimens.
Local plant or animal species can be used to build and test keys.

Choose between a trait-based key and DNA-based identification by asking what evidence is actually available.

Choose the best identification method for each case.

Decision
A student is classifying five visible leaves from local trees.
A water sample contains only traces of DNA from organisms in the pond.
A damaged insect specimen is missing several diagnostic body parts.
A local field guide uses paired yes/no choices from observable traits.

Choose the best identification method for each case.

Choose

HL Transfer: Boundaries And Identification

Exam Practice

The HL extension connects two problems: species boundaries and species identification. Bacteria challenge the biological species concept because they are asexual and exchange genes horizontally. Chromosome number can help define boundaries in many sexual species because meiosis conserves it and mismatches can produce infertile hybrids. Dichotomous keys identify visible organisms using paired choices. DNA barcoding and eDNA identify species using short sequences, PCR, and databases when visible traits are limited.

Bacterial boundaries are blurred by mutation and horizontal gene transfer.
Chromosome number is usually conserved within sexual species by meiosis.
Different chromosome numbers can prevent fertile hybrids, as in mules.
Dichotomous keys use observable traits and paired choices.
DNA barcoding/eDNA use PCR and database comparison for damaged, partial, hidden, or difficult specimens.
Local plant or animal species can be used to build and test dichotomous keys.

Match each HL cue to the correct explanation.

Match

Use this for HL questions on bacterial species boundaries, chromosome number, dichotomous keys, DNA barcoding, or eDNA.

Biological species concept does not apply well to asexual organisms such as bacteria.
Bacteria gain diversity by mutation and horizontal gene transfer, including transformation, plasmids, and recombination.
Diploid and haploid chromosome numbers are usually constant within a species because meiosis conserves chromosome number; mismatches can prevent fertile hybrids such as mules.
Dichotomous keys use paired yes/no choices from observable features arranged in a character matrix.
DNA barcoding/eDNA use selected short sequences, PCR, and database comparison, especially for damaged, partial, hidden, or hard-to-identify specimens.

Use this for HL questions on bacterial species boundaries, chromosome number, dichotomous keys, DNA barcoding, or eDNA.

HL species questions often ask why one definition or tool is not enough. The biological species concept is weak for bacteria because they are asexual and exchange genes through mutation and horizontal gene transfer such as transformation, plasmids, and recombination. In many sexual species, chromosome number is conserved by meiosis and mismatched numbers can prevent fertile hybrids, as in mules. For identification, dichotomous keys use visible traits in paired choices, whereas DNA barcoding and eDNA use PCR-amplified sequences compared with databases, which is useful when specimens are damaged, partial, hidden, or difficult to identify morphologically.

Using one method for every case instead of matching the evidence to the problem.