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IB Biology HL/Notes/A2.3 Viruses [HL only]

IB Biology HLA2.3 Viruses [HL only]Notes

Define The Virus Boundary

A virus is not a tiny cell. It is a non-cellular obligate parasite: it carries a DNA or RNA genome inside a protein capsid, but it lacks cytoplasm, ribosomes, and most metabolic enzymes. That missing cellular machinery is why viruses must use host cells to make proteins and replicate.

Viruses are non-cellular obligate parasites with fixed small size.
Shared virus core: DNA or RNA genome plus protein capsid.
Missing cell features: cytoplasm, ribosomes, and most metabolic enzymes.
Viruses depend on host machinery, so genetic material alone is not enough to make something cellular.

Compare what a virus carries with what a whole cell needs to function independently.

Sort each feature as carried by viruses, missing from viruses, or shared with cells.

Sort
Unsorted
6
virus package
0
missing from viruses
0
also found in cells
0

Sort each feature as carried by viruses, missing from viruses, or shared with cells.

Choose
DNA or RNA genome
protein capsid
ribosomes
cytoplasm
metabolic enzymes for independent metabolism
genetic material

Compare Virus Designs By Axes

Viruses do not share one body plan. Compare them along separate axes: genome type, genome shape, capsid shape, and envelope status. Genomes may be DNA or RNA, single- or double-stranded, linear, circular, or segmented. Capsids may be helical, polyhedral, conical, or complex. TMV, HIV, coronavirus, and lambda phage are useful because they stop students from using one virus as the template for all viruses.

Genome axis: DNA/RNA, single/double stranded, linear/circular/segmented.
Capsid axis: helical, polyhedral, conical, or complex.
Envelope axis: enveloped or non-enveloped.
Examples: TMV, HIV, coronavirus, lambda phage.
Compare axes separately so features do not get mixed.

Compare viruses across separate axes so genome, capsid shape, and envelope status do not get mixed together.

Match each example to its most useful distinguishing feature.

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Reasons
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Match each example to its most useful distinguishing feature.

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Run The Lytic Cycle

Practice

The lytic cycle is the fast takeover route. Lambda phage attaches to E. coli, injects double-stranded DNA, keeps viral DNA separate from the host chromosome, degrades host DNA, uses host machinery to make viral DNA and capsid proteins, assembles new phages, and releases them by lysis of the host cell.

Attachment to E. coli and DNA injection start the cycle.
Viral DNA remains separate while host DNA is degraded.
Host machinery makes viral genomes and capsid proteins.
New phages assemble before host lysis.
Lysis releases many phages and kills the host cell.

Place the lytic cycle steps in order.

Order
1
lysis and release
2
attachment to E. coli
3
assembly of new phages
4
injection of double-stranded DNA
5
host DNA degraded while viral DNA stays separate
6
host machinery makes viral DNA and capsid proteins

Use The Lysogenic Switch

Practice

The lysogenic cycle is the quiet route. Lambda phage DNA integrates into the E. coli chromosome as a prophage. As the bacterium divides by binary fission, the prophage is copied with the host genome. Stress, such as UV damage, can induce prophage excision and switch the virus into the lytic cycle.

Lysogenic DNA integrates into the host chromosome as a prophage.
The prophage is copied during binary fission.
The host can survive while carrying the prophage.
Stress can trigger excision and entry into the lytic cycle.
The switch explains how one virus can have latent and active phases.

Sort each statement into lytic or lysogenic.

Compare
A
lytic cycle
B
lysogenic cycle
Cases
5
lytic cycle
0
lysogenic cycle
0

Evaluate Virus Origin Hypotheses

Virus origins should be answered as competing hypotheses, not one settled story. Viruses are likely polyphyletic, meaning different groups may have independent origins. Virus-first suggests pre-cellular replicators; escaped genes or progressive origin suggests mobile genetic elements gained transmission; regressive or reduction origin suggests parasitic cells lost complexity. Shared obligate parasitism may be convergent evolution rather than proof of one common ancestor.

Viruses are likely polyphyletic with several independent origins.
Virus-first: viruses or replicators existed before modern cells.
Escaped genes/progressive: mobile genes gained transmission ability.
Regressive/reduction: parasitic cells lost complexity.
Shared obligate parasitism may reflect convergent evolution.

Treat virus origins as competing explanations, not one accepted story.

Match each origin hypothesis to its core claim.

Match
Reasons
0/4

Match each origin hypothesis to its core claim.

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Explain Why Viruses Evolve Fast

Exam Practice

Rapid viral evolution comes from variation plus speed. Mutation, recombination, large population size, and short life cycles generate many variants quickly. RNA viruses often mutate rapidly because replication lacks proofreading. This matters medically: influenza antigenic drift and shift can reduce vaccine match, while HIV reverse transcriptase errors help resistant variants appear during treatment.

Mutation and recombination create variation.
Large populations and short life cycles make selection fast.
RNA viruses often mutate rapidly because replication lacks proofreading.
Influenza drift is gradual antigen change; shift is sudden reassortment.
HIV reverse transcriptase errors can contribute to drug resistance.

Rapid evolution matters because it changes the target that immunity or treatment is trying to hit.

Match each rapid-evolution cause to its consequence.

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Reasons
0/5

Match each rapid-evolution cause to its consequence.

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HL Transfer: Build A Virus Answer

Exam Practice

A strong HL virus answer usually combines two moves: define the boundary, then explain the mechanism or consequence. Viruses have DNA or RNA plus a capsid but lack the machinery for independent metabolism. Their diversity is described by genome, capsid, and envelope. Lambda phage lets you contrast lytic takeover with lysogenic integration. Origin questions require competing hypotheses and polyphyly. Evolution questions require mutation, recombination, short cycles, large populations, and examples such as influenza or HIV.

Definition: non-cellular obligate parasite with genome plus capsid, lacking cytoplasm/ribosomes/metabolic enzymes.
Structure: compare genome, capsid shape, and envelope status.
Replication: lytic = takeover and lysis; lysogenic = prophage integration and induction.
Origins: likely polyphyletic, with virus-first, escaped-gene, and regressive hypotheses.
Evolution: rapid variation explains vaccine updates and treatment resistance.

Match each exam prompt to the evidence or mechanism you should use.

Match

Use this for combined HL virus questions about structure, replication, origins, or rapid evolution.

Define viruses as non-cellular obligate parasites with DNA or RNA plus capsid, lacking cytoplasm, ribosomes, and most metabolic enzymes.
Compare virus diversity by genome type/shape, capsid form, and envelope status, using examples such as TMV, HIV, coronavirus, and lambda phage.
Contrast lytic lambda phage replication with lysogenic prophage integration and induction.
Evaluate origins using polyphyly and virus-first, escaped-gene/progressive, and regressive/reduction hypotheses.
Explain rapid evolution using mutation, recombination, large populations, short life cycles, weak proofreading in RNA viruses, and influenza/HIV examples.

Use this for combined HL virus questions about structure, replication, origins, or rapid evolution.

Viruses are non-cellular obligate parasites with a DNA or RNA genome inside a protein capsid, but they lack cytoplasm, ribosomes, and most metabolic enzymes, so they depend on host cells. They vary in genome type, capsid shape, and envelope status. Lambda phage shows two contrasting cycles: in the lytic cycle viral DNA remains separate, host machinery makes viral parts, and the cell lyses; in lysogeny viral DNA integrates as a prophage and is copied with the host until stress induces lytic replication. Virus origins are likely polyphyletic, with virus-first, escaped-gene, and regressive hypotheses. Viral evolution is rapid because mutation, recombination, large populations, and short life cycles generate variation quickly, especially in many RNA viruses lacking proofreading; this affects influenza vaccines and HIV treatment.

Writing a fact list without contrasting mechanisms or explaining consequences.